Factsheet for Os02t0164900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58711	Soybean	nucleus	38.0	87.79
EES04575	Sorghum	nucleus	84.25	83.97
Os06t0677800-01	Rice	nucleus	84.69	83.86
TraesCS6D01G127600.2	Wheat	nucleus	84.58	82.85
TraesCS6B01G167100.1	Wheat	nucleus	84.47	82.74
TraesCS6A01G138600.4	Wheat	nucleus	84.47	82.65
HORVU6Hr1G026730.9	Barley	nucleus	84.25	82.35
Zm00001d053819_P002	Maize	nucleus	82.71	81.72
GSMUA_Achr5P00590_001	Banana	nucleus	69.49	69.42
VIT_10s0003g04100.t01	Wine grape	nucleus	68.39	68.39
GSMUA_Achr11P...	Banana	nucleus	62.33	68.28
GSMUA_Achr6P19850_001	Banana	nucleus	63.22	67.13
KRH21113	Soybean	nucleus	65.64	66.52
KRH11131	Soybean	nucleus	65.64	66.37
CDY02285	Canola	nucleus	62.78	65.29
Bra010776.1-P	Field mustard	nucleus	59.36	64.78
CDY12048	Canola	nucleus	60.35	64.7
CDX90245	Canola	nucleus	60.68	64.67
CDY09598	Canola	nucleus	61.78	64.48
KRH42603	Soybean	nucleus	63.99	64.2
AT1G30330.3	Thale cress	nucleus	64.21	62.35
Os12t0613700-01	Rice	nucleus	61.67	62.29
Os04t0671900-01	Rice	nucleus	55.62	61.74
Os11t0523800-01	Rice	nucleus	19.82	49.18
Os08t0520550-01	Rice	nucleus	31.83	45.37
Os06t0196700-02	Rice	nucleus	47.8	41.14
Os06t0702600-01	Rice	nucleus	42.73	39.15
Os04t0442000-01	Rice	nucleus	28.3	38.19
Os02t0557200-01	Rice	nucleus	28.3	37.91
Os04t0664400-01	Rice	nucleus	36.23	35.76
Os02t0141100-00	Rice	nucleus	43.61	35.48
Os01t0927600-01	Rice	nucleus	29.07	32.67
Os08t0520500-01	Rice	cytosol	1.76	32.0
Os01t0236300-01	Rice	nucleus	24.01	31.19
Os12t0479400-02	Rice	nucleus	28.85	31.15

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:4328406	EMBL:AB071294
EMBL:AK070569	InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:BAD25169.1	ProteinID:BAD25545.1
ProteinID:BAF07907.1	ProteinID:BAS77143.1	InterPro:DNA-bd_pseudobarrel_sf	ProteinID:EAZ21860.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	EnsemblPlantsGene:Os02g0164900	EnsemblPlants:Os02t0164900-01
InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF22	UniProt:Q6H6V4	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277
UniParc:UPI00003B4392	RefSeq:XP_015625706.1	SEG:seg	:	:	:

Description

AUXIN RESPONSE FACTOR 6ASimilar to Auxin response factor 3. (Os02t0164900-01);Similar to Auxin response factor 3. (Os02t0164900-02)

Coordinates

chr2:+:3486813..3492905

Molecular Weight (calculated)

100853.0 Da

IEP (calculated)

6.209

GRAVY (calculated)

-0.472

Length

908 amino acids

Sequence
(BLAST)

001: MKLSPSAGGV SDQPPSPPEV AEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV
101: YAQMTLQPLS PQELKDPFLP AELGTASKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELMAKDLH GNEWKFRHIF RGQPKRHLLT
201: TGWSVFVSAK RLVAGDSVLF IWNDSNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS
301: VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWMNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LYGGKEDDLA
401: SSLMWLRDSQ NTGFQSLNFG GLGMSPWMQP RLDSSLLGLQ PDMYQTIAAA AALQNTTKQV SPAMLQFQQP QNIVGRSSLL SSQILQQAQP QFQQMYHQNI
501: NGNSIQGHSQ PEYLQQPLQH CQSFNEQKPQ LQPQQQQQES HQQQPQHQQM QQQKHLSNFQ TVPNALSVFS QLSSTPQSTP STLQTVSPFS QQHNFPDTNI
601: SCLSPSNVSS MHDTLRSFPS EAASDLPGVP RITPVPVSDP WSSKRVAVES TITSRPHDIS SQIENFDLTP SSIPQNSTLA PLPGRECLVD QDGSSDPQNH
701: FLFGVNIDSQ SLLMQDGIPS LHNENSSSTI PYSTSNFLSP SQDDYPLSQT LTTPGCLDES GYVPCSDNAD QVKRPHATFV KVYKSGTVGR LLDITRFSSY
801: HELRSEVGRL FGLEGQLEDP LRSGWQLVFV DREDDVLLVG DDPWQEFVNS VSCIKILSPQ EVQQMGKPGI ELFSTSARRL GNSCDNYMSR QESRSLSTGI
901: ASVGSVEF

Best Arabidopsis Sequence Match ( AT1G30330.2 )
(BLAST)

001: MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.