Factsheet for Os04t0671900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21973088

gfp PMID: 21973088 doi

Y Qi, S Wang, C Shen, S Zhang, Y Chen, Y Xu, Y Liu, Y Wu, D Jiang

State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou 310058, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0286900-01
Os02t0723400-02
Os02t0805100-01
Os03t0633500-01
Os03t0633800-01
Os03t0742900-01
Os03t0797800-01
Os06t0166500-01
Os07t0182400-01
Os09t0527700-01
Os12t0601300-01
Os12t0601400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37020.1	Os03t0633500-01	AT1G04250.1	21734647
AT5G37020.1	Os03t0742900-01	AT1G04250.1	21734647
AT5G37020.1	Os12t0601300-01	AT1G04250.1	21734647
AT5G37020.1	Os09t0527700-01	AT1G80390.1	21734647
AT5G37020.1	Os03t0633500-01	AT3G23050.1	21734647
AT5G37020.1	Os03t0742900-01	AT3G23050.1	21734647
AT5G37020.1	Os12t0601300-01	AT3G23050.1	21734647
AT5G37020.1	Os01t0286900-01	AT3G62100.1	21734647
AT5G37020.1	Os02t0723400-02	AT3G62100.1	21734647
AT5G37020.1	Os03t0633800-01	AT4G14560.1	14729917
AT5G37020.1	Os03t0797800-01	AT4G14560.1	14729917
AT5G37020.1	Os07t0182400-01	AT4G14560.1	14729917
AT5G37020.1	Os12t0601400-01	AT4G14560.1	14729917
AT5G37020.1	Os03t0633800-01	AT4G14560.1	21734647
AT5G37020.1	Os03t0797800-01	AT4G14560.1	21734647
AT5G37020.1	Os07t0182400-01	AT4G14560.1	21734647
AT5G37020.1	Os12t0601400-01	AT4G14560.1	21734647
AT5G37020.1	Os02t0805100-01	AT4G32280.1	21734647
AT5G37020.1	Os06t0166500-01	AT4G32280.1	21734647
AT5G37020.1	Os03t0633800-01	AT5G43700.1	21734647
AT5G37020.1	Os03t0797800-01	AT5G43700.1	21734647
AT5G37020.1	Os07t0182400-01	AT5G43700.1	21734647
AT5G37020.1	Os12t0601400-01	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27404	Sorghum	nucleus	94.5	94.38
Zm00001d001879_P036	Maize	nucleus	93.15	93.27
TraesCS2B01G578500.1	Wheat	nucleus	91.93	90.28
TraesCS2A01G547800.1	Wheat	nucleus	91.69	90.25
TraesCS2D01G548900.1	Wheat	nucleus	91.81	90.16
HORVU2Hr1G121110.32	Barley	nucleus	92.05	89.86
Zm00001d026590_P003	Maize	nucleus	88.75	85.61
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	28.73	78.6
GSMUA_Achr4P25960_001	Banana	nucleus	63.45	64.79
GSMUA_Achr11P...	Banana	nucleus	63.81	64.44
KRH30740	Soybean	nucleus	64.79	62.8
KRG98044	Soybean	nucleus	64.3	62.54
KRH17251	Soybean	nucleus	64.06	62.16
KRH72896	Soybean	nucleus	64.3	62.1
Solyc02g037530.2.1	Tomato	nucleus	62.96	61.16
Solyc03g031970.2.1	Tomato	nucleus	62.47	60.55
CDY39274	Canola	nucleus	57.21	60.08
Bra004125.1-P	Field mustard	nucleus	57.09	59.87
CDY07460	Canola	nucleus	56.85	59.54
GSMUA_AchrUn_...	Banana	mitochondrion	37.04	59.3
AT5G37020.1	Thale cress	nucleus	58.68	59.19
PGSC0003DMT400048034	Potato	nucleus	54.16	58.91
CDY53537	Canola	nucleus	57.95	58.23
CDX74594	Canola	nucleus	58.07	58.0
Bra028110.1-P	Field mustard	nucleus	58.31	56.52
VIT_04s0079g00200.t01	Wine grape	nucleus	48.66	56.29
Os02t0164900-01	Rice	nucleus	61.74	55.62
Os06t0677800-01	Rice	nucleus	60.64	54.09
Os12t0613700-01	Rice	nucleus	57.82	52.61
Os11t0523800-01	Rice	nucleus	21.64	48.36
Os08t0520550-01	Rice	nucleus	32.76	42.07
GSMUA_Achr8P13620_001	Banana	nucleus	24.82	41.94
Os06t0196700-02	Rice	nucleus	50.12	38.86
Os02t0557200-01	Rice	nucleus	30.2	36.43
Os04t0442000-01	Rice	nucleus	29.95	36.4
Os06t0702600-01	Rice	nucleus	43.77	36.13
Os04t0664400-01	Rice	nucleus	38.75	34.46
Os02t0141100-00	Rice	nucleus	44.25	32.44
Os01t0927600-01	Rice	nucleus	30.68	31.06
Os01t0236300-01	Rice	nucleus	25.92	30.33
Os12t0479400-02	Rice	nucleus	30.81	29.96
Os08t0520500-01	Rice	cytosol	1.22	20.0

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:4337363	EMBL:AB071298
EMBL:AK071455	InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:BAF16136.1	ProteinID:BAS91572.1
ProteinID:BAS91573.1	ProteinID:BAS91574.1	ProteinID:CAE03604.2	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	ProteinID:EEE61886.1
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009733	GO:GO:0009734	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0043565	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
EnsemblPlantsGene:Os04g0671900	EnsemblPlants:Os04t0671900-01	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507
PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF2	UniProt:Q0J951	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI00001B17A4	RefSeq:XP_015636874.1	SEG:seg	:

Description

AUXIN RESPONSE FACTOR 8Transcription factor, Regulator for phosphate homeostasis (Os04t0671900-01);Similar to Auxin response factor 12. (Os04t0671900-02);Similar to Auxin response factor 12. (Os04t0671900-03)

Coordinates

chr4:-:34278477..34285845

Molecular Weight (calculated)

90905.9 Da

IEP (calculated)

6.317

GRAVY (calculated)

-0.467

Length

818 amino acids

Sequence
(BLAST)

001: MSSSSAASIG PPQPPPPPAP PEEEKKCLNS ELWHACAGPL VCLPTVGTRV VYFPQGHSEQ VAASTNKEVE GHIPNYPNLP AQLICQLHDV TMHADVETDE
101: VYAQMTLQPL NPQEQNDAYL PAEMGIMSKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAERV FPPLDFTQQP PAQELIARDI HDIEWKFRHI FRGQPKRHLL
201: TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL LGIRRASRPQ TVMPSSVLSS DSMHIGLLAA AAHAAATNSR FTIFYNPRAS PSEFVIPLSK YIKAVFHTRI
301: SVGMRFRMLF ETEESSVRRY MGTITEVSDA DPVRWPSSYW RSVKVGWDES TAGERPPRVS LWEIEPLTTF PMYPSLFPLR VKHPWYSGVA SLHDDSNALM
401: WLRGVAGEGG FQSLNFQSPG IGSWGQQRLH PSLLSSDHDQ YQAVVAAAAA SQSGGYLKQQ FLHLQQPMQS PQEHCNLNPL LQQQILQQAS QQQIINPDAQ
501: NIQTMLSPSA IQQQLQQLQQ MQQVQNDQKQ KIQPDQSYQV PTSAVLPSPT SLPSHLREKF GFSDPNANSS SFITSSSSDN MLDSSFLQGS SKAVDLSRFN
601: QPVASEQQQQ QQQAWKQKFM GSQSVSFGGS VLHNSPTSKD GSVENKIGRD VQNQSLFSPQ VDSSSLLYNM VPNLTSNVSD GNLSTIPSGS TYLQNAMYGC
701: LDDSSGLLQN TGENDPATRT FVKVYKSGSV GRSLDITRFS NYAELREELG QMFGIKGQLD DPDRSGWQLV FVDRENDVLL LGDDPWESFV NSVWYIKILS
801: PEDVHKMGKQ GNDPRYLS

Best Arabidopsis Sequence Match ( AT5G37020.1 )
(BLAST)

001: MKLSTSGLGQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP
101: LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS
201: AKRLVAGDSV IFIRNEKNQL FLGIRHATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML
301: FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLPDGRGDL GSGLTWLRGG
401: GGEQQGLLPL NYPSVGLFPW MQQRLDLSQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHHQYL QQSASHNSDL MLQQQQQQQA SRHLMHAQTQ
501: IMSENLPQQN MRQEVSNQPA GQQQQLQQPD QNAYLNAFKM QNGHLQQWQQ QSEMPSPSFM KSDFTDSSNK FATTASPASG DGNLLNFSIT GQSVLPEQLT
601: TEGWSPKASN TFSEPLSLPQ AYPGKSLALE PGNPQNPSLF GVDPDSGLFL PSTVPRFASS SGDAEASPMS LTDSGFQNSL YSCMQDTTHE LLHGAGQINS
701: SNQTKNFVKV YKSGSVGRSL DISRFSSYHE LREELGKMFA IEGLLEDPLR SGWQLVFVDK ENDILLLGDD PWESFVNNVW YIKILSPEDV HQMGDHGEGS
801: GGLFPQNPTH L

Arabidopsis Description

ARF8Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178UFA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.