Factsheet for VIT_04s0079g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g05560.t01
VIT_05s0020g04680.t01
VIT_05s0020g04690.t01
VIT_07s0005g02550.t01
VIT_09s0002g05150.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37020.1	VIT_05s0020g04690.t01	AT1G04250.1	21734647
AT5G37020.1	VIT_09s0002g05150.t01	AT1G52830.1	14729917
AT5G37020.1	VIT_09s0002g05150.t01	AT3G15540.1	14729917
AT5G37020.1	VIT_09s0002g05150.t01	AT3G15540.1	21734647
AT5G37020.1	VIT_05s0020g04690.t01	AT3G23050.1	21734647
AT5G37020.1	VIT_07s0005g02550.t01	AT3G62100.1	21734647
AT5G37020.1	VIT_05s0020g04680.t01	AT4G14560.1	14729917
AT5G37020.1	VIT_05s0020g04680.t01	AT4G14560.1	21734647
AT5G37020.1	VIT_04s0008g05560.t01	AT4G32280.1	21734647
AT5G37020.1	VIT_05s0020g04680.t01	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048034	Potato	nucleus	63.22	59.44
KRH17251	Soybean	nucleus	66.48	55.75
KRH30740	Soybean	nucleus	66.48	55.69
KRG98044	Soybean	nucleus	65.77	55.29
KRH72896	Soybean	nucleus	66.2	55.25
Solyc02g037530.2.1	Tomato	nucleus	64.5	54.16
Solyc03g031970.2.1	Tomato	nucleus	63.79	53.44
AT5G37020.1	Thale cress	nucleus	57.85	50.43
CDX74594	Canola	nucleus	57.71	49.82
CDY53537	Canola	nucleus	57.28	49.75
CDY07460	Canola	nucleus	53.89	48.78
Os04t0671900-01	Rice	nucleus	56.29	48.66
CDY39274	Canola	nucleus	53.61	48.65
Bra004125.1-P	Field mustard	nucleus	53.47	48.46
Bra028110.1-P	Field mustard	nucleus	57.85	48.46
GSMUA_Achr4P25960_001	Banana	nucleus	54.88	48.44
GSMUA_Achr11P...	Banana	nucleus	55.45	48.4
Zm00001d001879_P036	Maize	nucleus	55.3	47.86
KXG27404	Sorghum	nucleus	55.3	47.74
Zm00001d026590_P003	Maize	nucleus	55.45	46.23
TraesCS2A01G547800.1	Wheat	nucleus	53.89	45.85
TraesCS2D01G548900.1	Wheat	nucleus	53.89	45.74
HORVU2Hr1G121110.32	Barley	nucleus	54.17	45.7
TraesCS2B01G578500.1	Wheat	nucleus	53.75	45.62
GSMUA_Achr8P13620_001	Banana	nucleus	30.41	44.42
VIT_10s0003g04100.t01	Wine grape	nucleus	56.86	44.27
VIT_12s0028g01170.t01	Wine grape	nucleus	56.15	42.83
GSMUA_AchrUn_...	Banana	mitochondrion	27.3	37.77
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	14.29	33.78
VIT_11s0065g00310.t01	Wine grape	nucleus	43.0	27.26
VIT_18s0001g13930.t01	Wine grape	nucleus	36.35	26.97
VIT_11s0016g00640.t01	Wine grape	nucleus	43.0	26.32
VIT_18s0089g00910.t01	Wine grape	nucleus	23.2	25.27
VIT_12s0035g01800.t01	Wine grape	nucleus	24.19	25.22
VIT_02s0025g01740.t01	Wine grape	nucleus	24.05	24.93
VIT_15s0046g00290.t01	Wine grape	nucleus	24.05	24.22
VIT_07s0104g01230.t01	Wine grape	nucleus	23.2	23.56
VIT_01s0244g00150.t01	Wine grape	nucleus	23.48	21.59
VIT_17s0000g00320.t01	Wine grape	nucleus	25.32	20.77
VIT_06s0004g03130.t01	Wine grape	nucleus	23.06	20.43

Protein Annotations

EntrezGene:100258129	wikigene:100258129	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:CCB51104	ProteinID:CCB51104.1	InterPro:DNA-bd_pseudobarrel_sf
UniProt:F6HFY5	EMBL:FN595753	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009733
GO:GO:0009734	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0043565	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	EntrezGene:LOC100258129	wikigene:LOC100258129	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF2
SUPFAM:SSF101936	SUPFAM:SSF54277	TIGR:TC60673	UniParc:UPI000210879A	ArrayExpress:VIT_04s0079g00200	EnsemblPlantsGene:VIT_04s0079g00200
EnsemblPlants:VIT_04s0079g00200.t01	unigene:Vvi.12020	RefSeq:XP_002266678	RefSeq:XP_002266678.2	SEG:seg	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:F6HFY5]

Coordinates

chr4:+:10432267..10448180

Molecular Weight (calculated)

78752.1 Da

IEP (calculated)

6.761

GRAVY (calculated)

-0.471

Length

707 amino acids

Sequence
(BLAST)

001: METLAIHSYT FIAIHDKAKK GKPICMANVN KAKALMPCGR EMEGIQGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA TRPQTVMPSS
101: VLSSDSMHIG LLAAAAHAAA TNSCFTIFYN PRASPSEFVI PLSKYVKAVF HTRVSVGMRF RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG
201: WDESTAGERQ PRVSLWEIEP LTTFPMYPSL FPLRLKRPWH PGASSLHDSR DEAANGLMWL RGETGDQGLQ SLNFQTVGMF PWTQQRLDPT FLGNDHNQQY
301: QAMLAAGLQN LGSGDPLKQQ YMQFQQPFQY LQQTGSNNPL LQQRQQPQVI QQTIPQHMSH AQTQILQDNL PRHLLQQQLN NQQEQPQQQH SYQESFQIQS
401: DQLQQRPQPN VPSLSFSKAD FPDSNTKFSS ITPSSMQNML GSMCPEGSGN LLNFSRTTGQ SMLSEQPPQQ PWATKFTHSQ FNAFANSTSL PPFTGKDAAV
501: EPENCNLDAQ NHTLFGVNID SSGLLLPTTV PSFGSSSVDA DVSSMPLGAS GFQGSLFGCV QDPSELLQNA GQVDPPTPSR TFVKVYKSGS VGRSLDITRF
601: SSYHELREEL GQMFGIEGKL ENPLRSGWQL VFVDRENDVL LLGDDPWEAF VNNVWYIKIL SPEDVQKMGK QGIESGFSPN SAQRMNSSGT DDRDLVSGLP
701: SAGSLEY

Best Arabidopsis Sequence Match ( AT5G37020.1 )
(BLAST)

001: MKLSTSGLGQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP
101: LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS
201: AKRLVAGDSV IFIRNEKNQL FLGIRHATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML
301: FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLPDGRGDL GSGLTWLRGG
401: GGEQQGLLPL NYPSVGLFPW MQQRLDLSQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHHQYL QQSASHNSDL MLQQQQQQQA SRHLMHAQTQ
501: IMSENLPQQN MRQEVSNQPA GQQQQLQQPD QNAYLNAFKM QNGHLQQWQQ QSEMPSPSFM KSDFTDSSNK FATTASPASG DGNLLNFSIT GQSVLPEQLT
601: TEGWSPKASN TFSEPLSLPQ AYPGKSLALE PGNPQNPSLF GVDPDSGLFL PSTVPRFASS SGDAEASPMS LTDSGFQNSL YSCMQDTTHE LLHGAGQINS
701: SNQTKNFVKV YKSGSVGRSL DISRFSSYHE LREELGKMFA IEGLLEDPLR SGWQLVFVDK ENDILLLGDD PWESFVNNVW YIKILSPEDV HQMGDHGEGS
801: GGLFPQNPTH L

Arabidopsis Description

ARF8Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178UFA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.