Factsheet for VIT_12s0035g01800.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0180g00210.t01
VIT_06s0004g02750.t01
VIT_12s0035g01800.t01
VIT_15s0046g00290.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59750.1	VIT_12s0035g01800.t01	AT1G59750.1	22096563
AT1G59750.1	VIT_12s0035g01800.t01	AT1G59750.1	24485461
AT1G59750.1	VIT_06s0004g02750.t01	AT2G28350.1	22096563
AT1G59750.1	VIT_03s0180g00210.t01	AT3G50060.1	17675404
AT1G59750.1	VIT_15s0046g00290.t01	AT3G61830.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26266	Soybean	nucleus	79.06	80.6
KRH06026	Soybean	nucleus	78.02	79.55
Solyc01g103050.2.1	Tomato	nucleus	76.4	79.2
PGSC0003DMT400053380	Potato	nucleus	75.07	77.83
KRH51289	Soybean	nucleus	76.84	77.3
VIT_18s0089g00910.t01	Wine grape	nucleus	73.45	76.73
AT1G59750.1	Thale cress	nucleus	69.91	71.28
CDY65065	Canola	nucleus	69.32	71.1
CDY33603	Canola	nucleus	69.17	70.95
Bra035427.1-P	Field mustard	nucleus	69.47	70.83
CDY27291	Canola	nucleus	64.6	70.76
GSMUA_Achr10P...	Banana	nucleus	67.4	67.8
GSMUA_Achr9P08310_001	Banana	vacuole	48.08	66.94
Os02t0557200-01	Rice	nucleus	66.22	66.22
EES06968	Sorghum	nucleus	65.63	66.22
Zm00001d050781_P001	Maize	nucleus	61.06	65.71
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	67.4	65.57
GSMUA_Achr6P12780_001	Banana	nucleus	67.11	65.37
Os04t0442000-01	Rice	nucleus	64.75	65.23
GSMUA_Achr6P07390_001	Banana	nucleus	62.68	64.89
EES10850	Sorghum	nucleus	62.24	63.84
TraesCS2A01G309300.1	Wheat	nucleus	61.5	63.76
TraesCS2B01G326400.1	Wheat	nucleus	61.5	63.76
TraesCS2D01G307600.1	Wheat	nucleus	61.36	63.61
Zm00001d016838_P001	Maize	nucleus	65.49	63.16
HORVU2Hr1G076920.3	Barley	nucleus	60.91	61.83
Zm00001d003601_P006	Maize	nucleus	61.06	60.7
VIT_02s0025g01740.t01	Wine grape	nucleus	52.8	52.49
VIT_15s0046g00290.t01	Wine grape	nucleus	52.51	50.71
VIT_01s0244g00150.t01	Wine grape	nucleus	50.0	44.08
VIT_17s0000g00320.t01	Wine grape	nucleus	54.57	42.92
VIT_07s0104g01230.t01	Wine grape	nucleus	41.45	40.37
VIT_06s0004g03130.t01	Wine grape	nucleus	39.09	33.21
VIT_10s0003g04100.t01	Wine grape	nucleus	38.5	28.74
VIT_12s0028g01170.t01	Wine grape	nucleus	37.91	27.72
VIT_18s0001g13930.t01	Wine grape	nucleus	35.55	25.29
VIT_04s0079g00200.t01	Wine grape	nucleus	25.22	24.19
VIT_11s0065g00310.t01	Wine grape	nucleus	38.35	23.32
VIT_11s0016g00640.t01	Wine grape	nucleus	37.17	21.82

Protein Annotations

EntrezGene:100264303	wikigene:100264303	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:CBI29640	ProteinID:CBI29640.3	UniProt:D7TGL8
InterPro:DNA-bd_pseudobarrel_sf	EMBL:FN595990	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009733	GO:GO:0009734
GO:GO:0009987	GO:GO:0010150	GO:GO:0042802	GO:GO:0045892	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	EntrezGene:LOC100264303	wikigene:LOC100264303	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF28	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0001985B02	ArrayExpress:VIT_12s0035g01800	EnsemblPlantsGene:VIT_12s0035g01800	EnsemblPlants:VIT_12s0035g01800.t01
unigene:Vvi.21092	RefSeq:XP_002268348	RefSeq:XP_002268348.1	RefSeq:XP_010657917.1	SEG:seg	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:D7TGL8]

Coordinates

chr12:-:21940164..21949873

Molecular Weight (calculated)

75393.1 Da

IEP (calculated)

6.028

GRAVY (calculated)

-0.436

Length

678 amino acids

Sequence
(BLAST)

001: MALVASNYPS GGPHAGAPCD ALYKELWHAC AGPLVTVPRE GERVYYFPQG HMEQLEASTT HQGLDQQMPS FNLPSKILCK VVHVQLRAEP ETDEVYAQVT
101: LLPEPDQSEI TSPDPPLPEP QRCTVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMS QQPPWQELVA ADLHGNEWHF RHIFRGQPRR HLLTTGWSVF
201: VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQLSNMPSSV ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSRSEFIVS LNKYLEARNH KLSVGMRFKM
301: RFEGEEVPER RFSGTIVGVG DKNTSSGWAD SEWRSLKVQW DEPASIFRPE RVSAWELEPL VAAAAPTNLQ PAQRNKRARP PVLPSATPDL SVLGMWKSSV
401: ESPSGFPYCD PHRGRDLYPS PKFSSITKTN SFSFSGNSSP AAVSSNSMYW SNRMETATES FAPAVNKESG EKRRDTGSGC RLFGFQLLDN STLEETLPVL
501: TVGEDQPVPS LDVESDQHSE PSNINRSDIP SVSCEPDKLS LRSPQESQSR QIRSCTKVHM QGIAVGRAVD LTRFDRYEDL LKKLEEMFDI QGELCGLTSI
601: WQVVYTDDED DMMMVGDDPW LEFCSMVRKI FIYTAEEVKR LSPKIKLPAM EEIKPGKLDS DVAVAGTDDQ SSVVGPGC

Best Arabidopsis Sequence Match ( AT1G59750.2 )
(BLAST)

001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSGPD GVWKSPADTP
401: SSVPLFSPPA KAATFGHGGN KSFGVSIGSA FWPTNADSAA ESFASAFNNE STEKKQTNGN VCRLFGFELV ENVNVDECFS AASVSGAVAV DQPVPSNEFD
501: SGQQSEPLNI NQSDIPSGSG DPEKSSLRSP QESQSRQIRS CTKVHMQGSA VGRAIDLTRS ECYEDLFKKL EEMFDIKGEL LESTKKWQVV YTDDEDDMMM
601: VGDDPWNEFC GMVRKIFIYT PEEVKKLSPK NKLAVNARMQ LKADAEENGN TEGRSSSMAG SR

Arabidopsis Description

ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.