Factsheet for Os02t0557200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0236300-01
Os02t0557200-01
Os02t0628600-01
Os04t0442000-01
Os04t0519700-01
Os06t0685700-01
Os09t0106700-01
Os10t0479900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59750.1	Os02t0557200-01	AT1G59750.1	22096563
AT1G59750.1	Os04t0442000-01	AT1G59750.1	22096563
AT1G59750.1	Os02t0557200-01	AT1G59750.1	24485461
AT1G59750.1	Os04t0442000-01	AT1G59750.1	24485461
AT1G59750.1	Os02t0628600-01	AT2G28350.1	22096563
AT1G59750.1	Os04t0519700-01	AT2G28350.1	22096563
AT1G59750.1	Os06t0685700-01	AT2G28350.1	22096563
AT1G59750.1	Os10t0479900-01	AT2G28350.1	22096563
AT1G59750.1	Os09t0106700-01	AT3G50060.1	17675404
AT1G59750.1	Os01t0236300-01	AT3G61830.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06968	Sorghum	nucleus	84.22	84.97
Zm00001d050781_P001	Maize	nucleus	75.81	81.59
Zm00001d016838_P001	Maize	nucleus	82.01	79.09
Os04t0442000-01	Rice	nucleus	76.11	76.67
GSMUA_Achr9P08310_001	Banana	vacuole	49.7	69.2
GSMUA_Achr10P...	Banana	nucleus	67.55	67.95
PGSC0003DMT400053380	Potato	nucleus	64.6	66.97
Solyc01g103050.2.1	Tomato	nucleus	64.31	66.67
VIT_12s0035g01800.t01	Wine grape	nucleus	66.22	66.22
KRH26266	Soybean	nucleus	64.75	66.02
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	67.55	65.71
KRH06026	Soybean	nucleus	64.16	65.41
GSMUA_Achr6P12780_001	Banana	nucleus	66.81	65.09
GSMUA_Achr6P07390_001	Banana	nucleus	62.39	64.58
VIT_18s0089g00910.t01	Wine grape	nucleus	61.8	64.56
KRH51289	Soybean	nucleus	63.57	63.95
CDY27291	Canola	nucleus	57.67	63.17
Os11t0523800-01	Rice	nucleus	33.78	62.57
AT1G59750.1	Thale cress	nucleus	60.18	61.35
CDY65065	Canola	nucleus	59.44	60.97
Bra035427.1-P	Field mustard	nucleus	59.73	60.9
CDY33603	Canola	nucleus	59.29	60.82
Os01t0236300-01	Rice	nucleus	43.81	42.49
Os01t0927600-01	Rice	nucleus	49.26	41.34
Os12t0479400-02	Rice	nucleus	50.44	40.67
Os04t0671900-01	Rice	nucleus	36.43	30.2
Os08t0520550-01	Rice	nucleus	27.43	29.2
Os02t0164900-01	Rice	nucleus	37.91	28.3
Os06t0677800-01	Rice	nucleus	38.05	28.14
Os12t0613700-01	Rice	nucleus	36.28	27.36
Os06t0702600-01	Rice	nucleus	37.76	25.83
Os04t0664400-01	Rice	nucleus	33.92	25.0
Os06t0196700-02	Rice	nucleus	36.58	23.51
Os02t0141100-00	Rice	nucleus	38.05	23.12
Os08t0520500-01	Rice	cytosol	1.62	22.0

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:4329672	EMBL:AK070026
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:BAD16420.1	ProteinID:BAF09051.1	ProteinID:BAS79226.1
InterPro:DNA-bd_pseudobarrel_sf	ProteinID:EEE57194.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	EnsemblPlantsGene:Os02g0557200	EnsemblPlants:Os02t0557200-01	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF69
UniProt:Q6YVY0	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0000358D37	RefSeq:XP_015625501.1
SEG:seg	:	:	:	:	:

Description

AUXIN RESPONSE FACTOR 7Similar to Auxin response factor 1. (Os02t0557200-01)

Coordinates

chr2:+:21098190..21103974

Molecular Weight (calculated)

74791.0 Da

IEP (calculated)

6.386

GRAVY (calculated)

-0.494

Length

678 amino acids

Sequence
(BLAST)

001: MAGSVVAAAA AAGGGTGSSC DALYRELWHA CAGPLVTVPR QGELVYYFPQ GHMEQLEAST DQQLDQHLPL FNLPSKILCK VVNVELRAET DSDEVYAQIM
101: LQPEADQNEL TSPKPEPHEP EKCNVHSFCK TLTASDTSTH GGFSVLRRHA EECLPPLDMT QNPPWQELVA RDLHGNEWHF RHIFRGQPRR HLLTTGWSVF
201: VSSKRLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSQSEFVVS ANKYLEAKNS KISVGMRFKM
301: RFEGDEAPER RFSGTIIGVG SMSTSPWANS DWRSLKVQWD EPSVVPRPDR VSPWELEPLA VSNSQPSPQP PARNKRARPP ASNSIAPELP PVFGLWKSSA
401: ESTQGFSFSG LQRTQELYPS SPNPIFSTSL NVGFSTKNEP SALSNKHFYW PMRETRANSY SASISKVPSE KKQEPSSAGC RLFGIEISSA VEATSPLAAV
501: SGVGQDQPAA SVDAESDQLS QPSHANKSDA PAASSEPSPH ETQSRQVRSC TKVIMQGMAV GRAVDLTRLH GYDDLRCKLE EMFDIQGELS ASLKKWKVVY
601: TDDEDDMMLV GDDPWPEFCS MVKRIYIYTY EEAKQLTPKS KLPIIGDAIK PNPNKQSPES DMPHSDLDST APVTDKDC

Best Arabidopsis Sequence Match ( AT1G59750.4 )
(BLAST)

001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSDGV WKSPADTPSS
401: VPLFSPPAKA ATFGHGGNKS FGVSIGSAFW PTNADSAAES FASAFNNEST EKKQTNGNVC RLFGFELVEN VNVDECFSAA SVSGAVAVDQ PVPSNEFDSG
501: QQSEPLNINQ SDIPSGSGDP EKSSLRSPQE SQSRQIRSCT KVHMQGSAVG RAIDLTRSEC YEDLFKKLEE MFDIKGELLE STKKWQVVYT DDEDDMMMVG
601: DDPWNEFCGM VRKIFIYTPE EVKKLSPKNK LAVNARMQLK ADAEENGNTE GRSSSMAGSR

Arabidopsis Description

ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.