Factsheet for Os06t0685700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0190300-01
Os01t0236300-01
Os01t0286900-01
Os01t0741900-01
Os02t0228900-01
Os02t0628600-01
Os02t0723400-02
Os04t0519700-01
Os04t0664400-01
Os05t0523300-01
Os06t0685700-01
Os10t0479900-01
Os12t0274700-01
Os12t0291100-01
Os12t0291200-00
Os12t0291400-01
Os12t0292400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	Os04t0664400-01	AT1G19850.1	22096563
AT2G28350.1	Os01t0236300-01	AT1G34310.1	22096563
AT2G28350.1	Os02t0628600-01	AT2G28350.1	22096563
AT2G28350.1	Os04t0519700-01	AT2G28350.1	22096563
AT2G28350.1	Os06t0685700-01	AT2G28350.1	22096563
AT2G28350.1	Os10t0479900-01	AT2G28350.1	22096563
AT2G28350.1	Os01t0190300-01	AT3G16500.1	21734647
AT2G28350.1	Os01t0741900-01	AT3G16500.1	21734647
AT2G28350.1	Os02t0228900-01	AT3G16500.1	21734647
AT2G28350.1	Os05t0523300-01	AT3G16500.1	21734647
AT2G28350.1	Os01t0236300-01	AT3G61830.1	22096563
AT2G28350.1	Os01t0190300-01	AT5G25890.1	22096563
AT2G28350.1	Os01t0741900-01	AT5G25890.1	22096563
AT2G28350.1	Os02t0228900-01	AT5G25890.1	22096563
AT2G28350.1	Os05t0523300-01	AT5G25890.1	22096563
AT4G30080.1	Os01t0286900-01	AT3G17600.1	21798944
AT4G30080.1	Os02t0723400-02	AT3G17600.1	21798944
AT4G30080.1	Os12t0274700-01	AT5G38420.1	21798944
AT4G30080.1	Os12t0291100-01	AT5G38420.1	21798944
AT4G30080.1	Os12t0291200-00	AT5G38420.1	21798944
AT4G30080.1	Os12t0291400-01	AT5G38420.1	21798944
AT4G30080.1	Os12t0292400-01	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88840	Sorghum	nucleus	87.14	86.04
TraesCS7D01G436800.1	Wheat	nucleus	84.71	85.32
TraesCS7B01G346700.1	Wheat	nucleus	84.57	85.3
TraesCS7A01G446900.1	Wheat	nucleus	84.86	84.74
HORVU7Hr1G101270.1	Barley	nucleus	83.14	83.5
Zm00001d014507_P002	Maize	nucleus	84.29	81.38
Zm00001d000358_P001	Maize	nucleus	77.86	77.86
GSMUA_Achr4P18240_001	Banana	nucleus	63.71	73.48
GSMUA_Achr8P18930_001	Banana	nucleus	57.0	69.63
GSMUA_Achr5P18540_001	Banana	nucleus	50.71	68.4
GSMUA_Achr11P...	Banana	nucleus	52.29	67.65
GSMUA_Achr11P...	Banana	nucleus	58.0	67.22
GSMUA_Achr5P03960_001	Banana	nucleus	53.29	66.73
GSMUA_Achr5P14630_001	Banana	nucleus	52.0	66.06
VIT_06s0004g02750.t01	Wine grape	nucleus	65.71	64.7
Solyc09g007810.2.1	Tomato	nucleus	63.29	63.83
VIT_08s0040g01810.t01	Wine grape	nucleus	56.57	63.56
PGSC0003DMT400055522	Potato	nucleus	62.29	63.01
Os02t0628600-01	Rice	nucleus	61.14	62.85
VIT_13s0019g04380.t01	Wine grape	nucleus	60.43	62.3
CDY43553	Canola	nucleus	53.71	61.54
KRH22880	Soybean	nucleus	58.43	61.04
KRH26435	Soybean	nucleus	60.71	60.71
KRH25023	Soybean	nucleus	60.57	60.48
CDX68620	Canola	nucleus	53.29	60.45
KRH32480	Soybean	nucleus	60.29	60.29
Os10t0479900-01	Rice	nucleus	59.71	59.89
Bra011162.1-P	Field mustard	nucleus	55.29	59.81
KRH29907	Soybean	nucleus	59.43	59.68
Solyc11g069500.1.1	Tomato	nucleus	59.14	59.23
AT4G30080.1	Thale cress	nucleus	56.57	59.1
PGSC0003DMT400020874	Potato	nucleus	58.71	58.8
Os04t0519700-01	Rice	nucleus	32.43	57.91
CDY15734	Canola	nucleus	56.14	57.79
CDY04557	Canola	nucleus	56.43	57.66
KRG95987	Soybean	nucleus	57.29	57.29
Bra011955.1-P	Field mustard	nucleus	57.43	57.02
AT2G28350.1	Thale cress	nucleus	56.0	56.57
KRG91907	Soybean	nucleus	47.29	55.82
KRH34867	Soybean	nucleus	48.57	55.56
PGSC0003DMT400062489	Potato	nucleus	53.14	55.03
Solyc06g075150.2.1	Tomato	nucleus	52.71	54.99
Bra024109.1-P	Field mustard	nucleus	52.14	52.59
Solyc10g086130.1.1	Tomato	nucleus	44.57	49.45
CDY46728	Canola	nucleus	56.0	46.45
CDY30172	Canola	nucleus	52.43	44.22
Os04t0690600-01	Rice	plastid	25.0	33.08
Os05t0563400-01	Rice	nucleus	26.0	25.56
Os01t0670800-02	Rice	nucleus	26.14	25.49
Os05t0515400-01	Rice	nucleus	21.71	24.44
Os01t0753500-01	Rice	plastid	24.14	23.12
Os07t0183700-00	Rice	mitochondrion	12.57	16.79
Os07t0183350-00	Rice	extracellular	14.57	13.39
Os07t0183100-00	Rice	nucleus	4.86	9.5
Os07t0183200-01	Rice	nucleus	1.14	1.97

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:4341882	EMBL:AB071299
EMBL:AK100322	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:BAD45570.1	ProteinID:BAD46040.1	ProteinID:BAF20313.1
ProteinID:BAS99192.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	EnsemblPlantsGene:Os06g0685700	EnsemblPlants:Os06t0685700-01	InterPro:PB1_dom	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF27	UniProt:Q653H7
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000043A32C	RefSeq:XP_015644137.1	RefSeq:XP_015644138.1	SEG:seg

Description

AUXIN RESPONSE FACTOR 10Similar to Auxin response factor 16. (Os06t0685700-01)

Coordinates

chr6:+:28586492..28590205

Molecular Weight (calculated)

75886.4 Da

IEP (calculated)

7.574

GRAVY (calculated)

-0.308

Length

700 amino acids

Sequence
(BLAST)

001: MITFVDSAAK ERERESDKCL DPQLWHACAG GMVQMPPVSS KVYYFPQGHA EHAQGHGPVE FPGGRVPALV LCRVAGVRFM ADPDTDEVFA KIRLVPVRAN
101: EQGYAGDADD GIGAAAAAAA QEEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTVLA KDVHGVVWKF RHIYRGTPRR HLLTTGWSTF
201: VNQKKLVAGD SIVFMRTENG DLCVGIRRAK KGGVGGPEFL PPPPPPPPTP AAGGNYGGFS MFLRGDDDGN KMAAAARGKV RARVRPEEVV EAANLAVSGQ
301: PFEVVYYPRA STPEFCVKAG AVRAAMRTQW FAGMRFKMAF ETEDSSRISW FMGTVSAVQV ADPIRWPNSP WRLLQVSWDE PDLLQNVKRV SPWLVELVSN
401: MPAIHLAPFS PPRKKLCVPL YPELPIDGQF PTPMFHGNPL ARGVGPMCYF PDGTPAGIQG ARHAQFGISL SDLHLNKLQS SLSPHGLHQL DHGMQPRIAA
501: GLIIGHPAAR DDISCLLTIG SPQNNKKSDG KKAPAQLMLF GKPILTEQQI SLGDAASVDV KKSSSDGNAE NTVNKSNSDV SSPRSNQNGT TDNLSCGGVP
601: LCQDNKVLDV GLETGHCKVF MQSEDVGRTL DLSVVGSYEE LYRRLADMFG IEKAELMSHV FYRDAAGALK HTGDEPFSEF TKTARRLNIL TDTSGDNLAR

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.