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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 5
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:plastid
iPSORT:secretory
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:plastid
TargetP:secretory
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0621300-01
Os01t0915400-00
Os01t0948900-01
Os02t0258300-01
Os02t0489550-00
Os02t0708400-01
Os03t0673000-00
Os03t0673500-00
Os03t0727000-02
Os03t0727200-00
Os03t0771500-01
Os03t0772100-00
Os04t0627000-02
Os05t0586400-01
Os06t0524300-01
Os07t0129700-01
Os08t0136100-01
Os08t0187500-01
Os08t0428400-01
Os08t0520900-00
Os10t0362300-03
Os11t0141900-00
Os12t0138500-01
Os12t0538300-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G67090.1 Os10t0362300-03 AT5G35750.1 18642946
AT5G38420.1 Os01t0621300-01 AT1G01440.1 21798944
AT5G38420.1 Os02t0258300-01 AT1G01440.1 21798944
AT5G38420.1 Os05t0586400-01 AT1G01440.1 21798944
AT5G38420.1 Os06t0524300-01 AT1G01440.1 21798944
AT5G38420.1 Os01t0948900-01 AT2G41370.1 21798944
AT5G38420.1 Os11t0141900-00 AT2G41370.1 21798944
AT5G38420.1 Os12t0138500-01 AT2G41370.1 21798944
AT5G38420.1 Os01t0915400-00 AT3G04240.1 21798944
AT5G38420.1 Os02t0489550-00 AT3G04240.1 21798944
AT5G38420.1 Os08t0428400-01 AT3G17860.1 21798944
AT5G38420.1 Os02t0708400-01 AT3G27960.1 21798944
AT5G38420.1 Os04t0627000-02 AT4G04890.1 21798944
AT5G38420.1 Os08t0136100-01 AT4G04890.1 21798944
AT5G38420.1 Os08t0187500-01 AT4G04890.1 21798944
AT5G38420.1 Os03t0673000-00 AT4G08150.1 21798944
AT5G38420.1 Os03t0673500-00 AT4G08150.1 21798944
AT5G38420.1 Os03t0727000-02 AT4G08150.1 21798944
AT5G38420.1 Os03t0727200-00 AT4G08150.1 21798944
AT5G38420.1 Os03t0771500-01 AT4G08150.1 21798944
AT5G38420.1 Os03t0772100-00 AT4G08150.1 21798944
AT5G38420.1 Os07t0129700-01 AT4G08150.1 21798944
AT5G38420.1 Os12t0538300-01 AT5G11980.1 21798944
AT5G38430.1 Os08t0520900-00 AT2G39930.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr8P18400_001 Banana cytosol 16.67 61.54
KRH46925 Soybean plastid 42.71 45.56
Os12t0291100-01 Rice plastid 71.88 39.43
KRG99964 Soybean plastid 39.58 38.0
HORVU7Hr1G048050.2 Barley plastid 34.38 37.5
Os12t0292400-01 Rice extracellular 66.67 36.57
Os12t0291400-01 Rice plastid 66.67 36.57
Os12t0274700-01 Rice plastid 65.62 36.0
TraesCS2D01G065500.1 Wheat plastid 59.38 34.55
TraesCS2D01G065200.1 Wheat plastid 61.46 33.71
TraesCS5A01G165400.2 Wheat plastid 60.42 33.14
TraesCS5A01G165700.1 Wheat plastid 60.42 33.14
TraesCS5B01G162600.1 Wheat plastid 60.42 33.14
TraesCS5B01G162800.1 Wheat plastid 60.42 33.14
HORVU5Hr1G051010.2 Barley plastid 60.42 33.14
HORVU5Hr1G038630.1 Barley plastid 60.42 33.14
TraesCS5D01G169600.2 Wheat plastid 60.42 33.14
TraesCS2B01G079200.1 Wheat plastid 60.42 33.14
TraesCS5D01G169900.2 Wheat plastid 60.42 33.14
EES09292 Sorghum plastid 58.33 33.14
Zm00001d052595_P001 Maize plastid 58.33 32.94
TraesCS2D01G065300.1 Wheat plastid 59.38 32.76
TraesCS2A01G066700.1 Wheat plastid 59.38 32.76
TraesCS2B01G079100.1 Wheat plastid 59.38 32.76
TraesCS2D01G065100.2 Wheat plastid 59.38 32.76
TraesCS2A01G067300.1 Wheat plastid 59.38 32.57
TraesCS2D01G065600.1 Wheat plastid 59.38 32.57
TraesCS2A01G066800.1 Wheat plastid 59.38 32.57
TraesCS2B01G079400.1 Wheat plastid 59.38 32.57
HORVU2Hr1G010630.1 Barley plastid 59.38 32.57
HORVU5Hr1G033540.2 Barley plastid 59.38 32.57
HORVU2Hr1G010690.1 Barley plastid 59.38 32.57
Zm00001d004894_P001 Maize plastid 57.29 32.35
TraesCS2A01G067200.1 Wheat plastid 58.33 32.0
TraesCS2D01G065400.1 Wheat plastid 58.33 32.0
TraesCS2A01G067100.1 Wheat plastid 58.33 32.0
HORVU1Hr1G035720.2 Barley plastid 58.33 31.82
TraesCS2B01G079300.1 Wheat plastid 57.29 31.61
KRG93873 Soybean plastid 34.38 31.43
TraesCS2A01G067000.1 Wheat plastid 56.25 30.86
TraesCS2B01G078900.2 Wheat plastid 59.38 30.81
HORVU2Hr1G010670.1 Barley plastid 60.42 30.53
HORVU5Hr1G050990.4 Barley plastid 60.42 30.21
TraesCS2A01G066900.1 Wheat plastid 60.42 30.21
TraesCS2B01G079500.1 Wheat plastid 60.42 30.05
KRG93872 Soybean plastid 41.67 29.63
KRG99965 Soybean plastid 39.58 29.01
GSMUA_Achr6P09710_001 Banana plastid 45.83 27.85
PGSC0003DMT400050381 Potato cytosol, extracellular, plastid 51.04 27.07
KRH18247 Soybean nucleus, plastid 50.0 26.97
KRG93871 Soybean plastid 50.0 26.97
KRG93867 Soybean plastid 50.0 26.97
PGSC0003DMT400032975 Potato mitochondrion, plastid 50.0 26.67
GSMUA_Achr10P... Banana plasma membrane 43.75 26.58
GSMUA_Achr2P22730_001 Banana unclear 43.75 26.58
PGSC0003DMT400067905 Potato plastid 43.75 26.42
Solyc02g085950.2.1 Tomato extracellular 48.96 26.11
Solyc03g034220.2.1 Tomato plastid 47.92 25.56
Bra028174.1-P Field mustard plastid 47.92 25.41
CDY01665 Canola plastid 47.92 25.41
CDX67402 Canola plastid 47.92 25.41
CDY52468 Canola plastid 47.92 25.41
CDY71122 Canola plastid 47.92 25.41
Bra025431.1-P Field mustard plastid 47.92 25.41
AT5G38430.1 Thale cress plastid 47.92 25.41
AT1G67090.1 Thale cress plastid 46.88 25.0
CDY42338 Canola plastid 46.88 24.86
Bra028406.1-P Field mustard plastid 46.88 24.86
CDX74525 Canola plastid 46.88 24.86
CDX74532 Canola plastid 46.88 24.86
AT5G38420.1 Thale cress plastid 46.88 24.86
CDY01671 Canola plastid 46.88 24.86
AT5G38410.3 Thale cress plastid 47.92 24.73
Bra028181.1-P Field mustard plastid 41.67 24.69
KRH15458 Soybean plastid 40.62 24.53
CDX99682 Canola plastid 47.92 24.34
CDY67657 Canola plastid 45.83 24.31
CDY12613 Canola plastid 44.79 23.76
PGSC0003DMT400062138 Potato cytosol, plastid 44.79 23.76
Solyc02g063150.2.1 Tomato nucleus, plastid 44.79 23.76
Bra034027.1-P Field mustard plastid 44.79 23.76
Bra034029.1-P Field mustard plastid 44.79 23.76
Bra034024.1-P Field mustard plastid 42.71 22.65
CDY42337 Canola plastid 42.71 22.65
CDY12616 Canola plastid 42.71 22.65
VIT_17s0000g03690.t01 Wine grape plastid 41.67 22.22
CDY42341 Canola plastid 38.54 19.89
KRH01757 Soybean plastid 22.92 14.67
Os02t0152400-01 Rice plastid 22.92 12.02
CDY12612 Canola cytosol 11.46 9.09
Protein Annotations
KEGG:00630+4.1.1.39KEGG:00710+4.1.1.39MapMan:1.2.1.1.2Gene3D:3.30.190.10UniProt:A0A0P0Y9S5ProteinID:BAT16787.1
GO:GO:0003674GO:GO:0003824GO:GO:0004497GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0008150GO:GO:0008152GO:GO:0009536GO:GO:0009853GO:GO:0009987
GO:GO:0015977GO:GO:0015979GO:GO:0016491GO:GO:0016829GO:GO:0016984GO:GO:0055114
InterPro:IPR036385EnsemblPlantsGene:Os12g0291200EnsemblPlants:Os12t0291200-00PFAM:PF12338PRINTS:PR00152PANTHER:PTHR31262
InterPro:RuBisCO_scInterPro:RuBisCO_ssu_NInterPro:RuBisCO_ssu_sfSUPFAM:SSF55239UniParc:UPI000393B0DD:
Description
Similar to Ribulose bisphosphate carboxylase small chain. (Os12t0291200-00)
Coordinates
chr12:+:11265647..11267889
Molecular Weight (calculated)
10374.8 Da
IEP (calculated)
9.719
GRAVY (calculated)
0.135
Length
96 amino acids
Sequence
(BLAST)
1: MVENVINLKG PSYVTMAPIV IASLATSVAP FQGLKSTAGL PVSRRSTNSG FGDITNGGRI KCMQVWPVDG KKKFETLSYL PLLTAEDLLK QIEHLL
Best Arabidopsis Sequence Match ( AT1G67090.2 )
(BLAST)
001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFD
101: TDLCTVSTVT HPDTMMDGTG QCGSFPCSVA PTPLKC
Arabidopsis Description
RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.