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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • mitochondrion 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:plastid
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400001405
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400012712
PGSC0003DMT400015729
PGSC0003DMT400017657
PGSC0003DMT400021076
PGSC0003DMT400027591
PGSC0003DMT400036790
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400040741
PGSC0003DMT400053345
PGSC0003DMT400069515
PGSC0003DMT400074101
PGSC0003DMT400076710
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G67090.1 PGSC0003DMT400040141 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400040142 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400040143 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400040144 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400040206 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400040207 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400077934 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400015729 AT5G35750.1 18642946
AT5G38420.1 PGSC0003DMT400021076 AT2G41370.1 21798944
AT5G38420.1 PGSC0003DMT400027591 AT2G41370.1 21798944
AT5G38420.1 PGSC0003DMT400076710 AT2G41370.1 21798944
AT5G38420.1 PGSC0003DMT400040741 AT3G04240.1 21798944
AT5G38420.1 PGSC0003DMT400036790 AT3G17860.1 21798944
AT5G38420.1 PGSC0003DMT400074101 AT3G17860.1 21798944
AT5G38420.1 PGSC0003DMT400001405 AT3G27960.1 21798944
AT5G38420.1 PGSC0003DMT400012712 AT4G08150.1 21798944
AT5G38420.1 PGSC0003DMT400017657 AT5G11980.1 21798944
AT5G38420.1 PGSC0003DMT400001474 AT5G24660.1 21798944
AT5G38420.1 PGSC0003DMT400001475 AT5G24660.1 21798944
AT5G38420.1 PGSC0003DMT400001476 AT5G24660.1 21798944
AT5G38420.1 PGSC0003DMT400069515 AT5G24660.1 21798944
AT5G38430.1 PGSC0003DMT400053345 AT2G39930.1 21798944
AT5G38430.1 PGSC0003DMT400040141 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400040142 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400040143 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400040144 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400040206 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400040207 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400077934 AT3G46090.1 17259181
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400032975 Potato mitochondrion, plastid 99.37 87.78
Solyc02g085950.2.1 Tomato extracellular 95.6 84.44
PGSC0003DMT400050381 Potato cytosol, extracellular, plastid 95.6 83.98
PGSC0003DMT400062138 Potato cytosol, plastid 93.08 81.77
GSMUA_Achr2P22730_001 Banana unclear 72.96 73.42
KRH18247 Soybean nucleus, plastid 81.13 72.47
KRG93871 Soybean plastid 80.5 71.91
KRG93867 Soybean plastid 80.5 71.91
Bra028181.1-P Field mustard plastid 72.96 71.6
GSMUA_Achr6P09710_001 Banana plastid 71.07 71.52
GSMUA_Achr10P... Banana plasma membrane 70.44 70.89
AT5G38420.1 Thale cress plastid 77.36 67.96
AT5G38430.1 Thale cress plastid 76.73 67.4
AT1G67090.1 Thale cress plastid 75.47 66.67
AT5G38410.3 Thale cress plastid 77.36 66.13
CDY52468 Canola plastid 74.84 65.75
CDX67402 Canola plastid 74.84 65.75
Os12t0291400-01 Rice plastid 72.33 65.71
Os12t0291100-01 Rice plastid 72.33 65.71
Os12t0274700-01 Rice plastid 72.33 65.71
CDY01665 Canola plastid 74.21 65.19
Bra028174.1-P Field mustard plastid 74.21 65.19
Bra028406.1-P Field mustard plastid 74.21 65.19
CDY67657 Canola plastid 74.21 65.19
CDY71122 Canola plastid 74.21 65.19
Bra025431.1-P Field mustard plastid 74.21 65.19
Os12t0292400-01 Rice extracellular 71.7 65.14
CDY01671 Canola plastid 72.96 64.09
CDX74525 Canola plastid 72.96 64.09
CDX74532 Canola plastid 72.96 64.09
KRG93873 Soybean plastid 42.14 63.81
Zm00001d004894_P001 Maize plastid 67.92 63.53
HORVU2Hr1G010630.1 Barley plastid 69.81 63.43
HORVU2Hr1G010690.1 Barley plastid 69.81 63.43
HORVU5Hr1G051010.2 Barley plastid 69.81 63.43
HORVU5Hr1G038630.1 Barley plastid 69.81 63.43
TraesCS2A01G066700.1 Wheat plastid 69.18 63.22
TraesCS2D01G065300.1 Wheat plastid 69.18 63.22
HORVU1Hr1G035720.2 Barley plastid 69.81 63.07
TraesCS2D01G065500.1 Wheat plastid 65.41 63.03
TraesCS5B01G162600.1 Wheat plastid 69.18 62.86
TraesCS5B01G162800.1 Wheat plastid 69.18 62.86
TraesCS5A01G165700.1 Wheat plastid 69.18 62.86
TraesCS5A01G165400.2 Wheat plastid 69.18 62.86
TraesCS2D01G065600.1 Wheat plastid 69.18 62.86
TraesCS5D01G169900.2 Wheat plastid 69.18 62.86
TraesCS5D01G169600.2 Wheat plastid 69.18 62.86
TraesCS2A01G067300.1 Wheat plastid 69.18 62.86
TraesCS2B01G079200.1 Wheat plastid 69.18 62.86
TraesCS2B01G079400.1 Wheat plastid 69.18 62.86
HORVU5Hr1G033540.2 Barley plastid 69.18 62.86
TraesCS2D01G065200.1 Wheat plastid 69.18 62.86
TraesCS2B01G079100.1 Wheat plastid 68.55 62.64
TraesCS2B01G079300.1 Wheat plastid 68.55 62.64
CDX99682 Canola plastid 74.21 62.43
Zm00001d052595_P001 Maize plastid 66.67 62.35
TraesCS2D01G065400.1 Wheat plastid 68.55 62.29
TraesCS2A01G066800.1 Wheat plastid 68.55 62.29
TraesCS2A01G067200.1 Wheat plastid 68.55 62.29
TraesCS2A01G067100.1 Wheat plastid 68.55 62.29
EES09292 Sorghum plastid 66.04 62.13
TraesCS2D01G065100.2 Wheat plastid 67.92 62.07
Bra034024.1-P Field mustard plastid 70.44 61.88
CDY12613 Canola plastid 70.44 61.88
Bra034029.1-P Field mustard plastid 70.44 61.88
Bra034027.1-P Field mustard plastid 70.44 61.88
VIT_17s0000g03690.t01 Wine grape plastid 69.81 61.67
GSMUA_Achr8P18400_001 Banana cytosol 10.06 61.54
CDY12616 Canola plastid 69.81 61.33
TraesCS2A01G067000.1 Wheat plastid 67.3 61.14
CDY42337 Canola plastid 69.18 60.77
CDY42338 Canola plastid 69.18 60.77
KRG93872 Soybean plastid 51.57 60.74
KRH46925 Soybean plastid 33.96 60.0
HORVU2Hr1G010670.1 Barley plastid 69.81 58.42
TraesCS2B01G078900.2 Wheat plastid 67.92 58.38
CDY42341 Canola plastid 67.92 58.06
TraesCS2A01G066900.1 Wheat plastid 69.18 57.29
TraesCS2B01G079500.1 Wheat plastid 69.18 56.99
CDY12612 Canola cytosol 41.51 54.55
KRH01757 Soybean plastid 50.31 53.33
PGSC0003DMT400010489 Potato plastid 52.83 49.7
KRG99965 Soybean plastid 40.25 48.85
HORVU5Hr1G050990.4 Barley plastid 58.49 48.44
KRG99964 Soybean plastid 29.56 47.0
Os12t0291200-00 Rice plastid 26.42 43.75
KRH15458 Soybean plastid 38.99 38.99
HORVU7Hr1G048050.2 Barley plastid 20.13 36.36
Protein Annotations
KEGG:00630+4.1.1.39KEGG:00710+4.1.1.39MapMan:1.2.1.1.2Gene3D:3.30.190.10GO:GO:0003674GO:GO:0003824
GO:GO:0004497GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0008150
GO:GO:0008152GO:GO:0009507GO:GO:0009536GO:GO:0009853GO:GO:0009987GO:GO:0015977
GO:GO:0015979GO:GO:0016491GO:GO:0016829GO:GO:0016984GO:GO:0055114InterPro:IPR036385
UniProt:M1CI30PFAM:PF00101PFAM:PF12338EnsemblPlantsGene:PGSC0003DMG400026409PGSC:PGSC0003DMG400026409EnsemblPlants:PGSC0003DMT400067905
PRINTS:PR00152PANTHER:PTHR31262PANTHER:PTHR31262:SF0InterPro:RuBisCO_scInterPro:RuBisCO_sc_domInterPro:RuBisCO_ssu_N
InterPro:RuBisCO_ssu_sfSMART:SM00961SUPFAM:SSF55239UniParc:UPI0002960446::
Description
Ribulose bisphosphate carboxylase small chain 2B, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400026409]
Coordinates
chr2:+:41254716..41258721
Molecular Weight (calculated)
18370.0 Da
IEP (calculated)
7.125
GRAVY (calculated)
-0.371
Length
159 amino acids
Sequence
(BLAST)
001: MVGPFTGLKS TASFPVSRKQ NLDITSIASN GGRVRCMQVW PPINMKKYET LSYLPDLSDE QLLKEVEYLL KNGWVPCLEF ETEHGFVYRE NNKSPGYYDG
101: RYWTMWKLPM FGCTDATQVL AEVEEAKKAY PQAWIRIIGF DNVRQVQCIS FIAYKPEGY
Best Arabidopsis Sequence Match ( AT1G67090.1 )
(BLAST)
001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
Arabidopsis Description
RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.