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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid

Predictor Summary:
  • plastid 10
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 mitochondrion: 24351685
msms PMID: 24351685 doi
F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller
Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400001405
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400012712
PGSC0003DMT400015729
PGSC0003DMT400017657
PGSC0003DMT400021076
PGSC0003DMT400027591
PGSC0003DMT400036790
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400040741
PGSC0003DMT400053345
PGSC0003DMT400069515
PGSC0003DMT400074101
PGSC0003DMT400076710
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G67090.1 PGSC0003DMT400040141 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400040142 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400040143 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400040144 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400040206 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400040207 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400077934 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400015729 AT5G35750.1 18642946
AT5G38420.1 PGSC0003DMT400021076 AT2G41370.1 21798944
AT5G38420.1 PGSC0003DMT400027591 AT2G41370.1 21798944
AT5G38420.1 PGSC0003DMT400076710 AT2G41370.1 21798944
AT5G38420.1 PGSC0003DMT400040741 AT3G04240.1 21798944
AT5G38420.1 PGSC0003DMT400036790 AT3G17860.1 21798944
AT5G38420.1 PGSC0003DMT400074101 AT3G17860.1 21798944
AT5G38420.1 PGSC0003DMT400001405 AT3G27960.1 21798944
AT5G38420.1 PGSC0003DMT400012712 AT4G08150.1 21798944
AT5G38420.1 PGSC0003DMT400017657 AT5G11980.1 21798944
AT5G38420.1 PGSC0003DMT400001474 AT5G24660.1 21798944
AT5G38420.1 PGSC0003DMT400001475 AT5G24660.1 21798944
AT5G38420.1 PGSC0003DMT400001476 AT5G24660.1 21798944
AT5G38420.1 PGSC0003DMT400069515 AT5G24660.1 21798944
AT5G38430.1 PGSC0003DMT400053345 AT2G39930.1 21798944
AT5G38430.1 PGSC0003DMT400040141 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400040142 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400040143 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400040144 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400040206 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400040207 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400077934 AT3G46090.1 17259181
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400067905 Potato plastid 87.78 99.37
Solyc02g085950.2.1 Tomato extracellular 95.56 95.56
PGSC0003DMT400050381 Potato cytosol, extracellular, plastid 94.44 93.92
PGSC0003DMT400062138 Potato cytosol, plastid 92.22 91.71
KRH18247 Soybean nucleus, plastid 78.89 79.78
KRG93871 Soybean plastid 78.33 79.21
KRG93867 Soybean plastid 78.33 79.21
KRH46925 Soybean plastid 37.78 75.56
AT5G38420.1 Thale cress plastid 75.56 75.14
AT5G38430.1 Thale cress plastid 75.56 75.14
GSMUA_Achr2P22730_001 Banana unclear 65.0 74.05
CDY52468 Canola plastid 74.44 74.03
AT5G38410.3 Thale cress plastid 76.11 73.66
Bra025431.1-P Field mustard plastid 73.89 73.48
Bra028174.1-P Field mustard plastid 73.33 72.93
CDY71122 Canola plastid 73.33 72.93
AT1G67090.1 Thale cress plastid 72.78 72.78
CDX67402 Canola plastid 72.78 72.38
CDY01665 Canola plastid 72.78 72.38
Bra028181.1-P Field mustard plastid 65.0 72.22
GSMUA_Achr6P09710_001 Banana plastid 63.33 72.15
Bra028406.1-P Field mustard plastid 72.22 71.82
CDY01671 Canola plastid 72.22 71.82
CDY67657 Canola plastid 72.22 71.82
CDX74532 Canola plastid 72.22 71.82
GSMUA_Achr10P... Banana plasma membrane 62.78 71.52
CDX74525 Canola plastid 71.67 71.27
CDX99682 Canola plastid 73.89 70.37
Os12t0274700-01 Rice plastid 68.33 70.29
VIT_17s0000g03690.t01 Wine grape plastid 70.0 70.0
Os12t0292400-01 Rice extracellular 67.78 69.71
Os12t0291100-01 Rice plastid 67.78 69.71
Os12t0291400-01 Rice plastid 67.78 69.71
KRG93872 Soybean plastid 51.11 68.15
Zm00001d004894_P001 Maize plastid 63.89 67.65
HORVU1Hr1G035720.2 Barley plastid 66.11 67.61
HORVU2Hr1G010630.1 Barley plastid 65.56 67.43
HORVU2Hr1G010690.1 Barley plastid 65.56 67.43
HORVU5Hr1G038630.1 Barley plastid 65.56 67.43
HORVU5Hr1G051010.2 Barley plastid 65.56 67.43
CDY12613 Canola plastid 67.78 67.4
Bra034027.1-P Field mustard plastid 67.78 67.4
Bra034029.1-P Field mustard plastid 67.78 67.4
TraesCS2D01G065500.1 Wheat plastid 61.67 67.27
TraesCS2A01G066700.1 Wheat plastid 65.0 67.24
TraesCS2D01G065300.1 Wheat plastid 65.0 67.24
TraesCS2B01G079400.1 Wheat plastid 65.0 66.86
TraesCS2B01G079200.1 Wheat plastid 65.0 66.86
TraesCS2D01G065200.1 Wheat plastid 65.0 66.86
TraesCS2D01G065600.1 Wheat plastid 65.0 66.86
HORVU5Hr1G033540.2 Barley plastid 65.0 66.86
TraesCS5A01G165400.2 Wheat plastid 65.0 66.86
TraesCS5A01G165700.1 Wheat plastid 65.0 66.86
TraesCS2A01G067300.1 Wheat plastid 65.0 66.86
TraesCS5B01G162600.1 Wheat plastid 65.0 66.86
TraesCS5B01G162800.1 Wheat plastid 65.0 66.86
TraesCS5D01G169600.2 Wheat plastid 65.0 66.86
TraesCS5D01G169900.2 Wheat plastid 65.0 66.86
TraesCS2B01G079300.1 Wheat plastid 64.44 66.67
TraesCS2B01G079100.1 Wheat plastid 64.44 66.67
Zm00001d052595_P001 Maize plastid 62.78 66.47
Bra034024.1-P Field mustard plastid 66.67 66.3
TraesCS2A01G067100.1 Wheat plastid 64.44 66.29
TraesCS2A01G067200.1 Wheat plastid 64.44 66.29
TraesCS2D01G065400.1 Wheat plastid 64.44 66.29
TraesCS2A01G066800.1 Wheat plastid 64.44 66.29
EES09292 Sorghum plastid 62.22 66.27
TraesCS2D01G065100.2 Wheat plastid 63.89 66.09
CDY12616 Canola plastid 66.11 65.75
CDY42338 Canola plastid 66.11 65.75
CDY42337 Canola plastid 65.56 65.19
TraesCS2A01G067000.1 Wheat plastid 63.33 65.14
KRG93873 Soybean plastid 37.78 64.76
CDY42341 Canola plastid 64.44 62.37
TraesCS2B01G078900.2 Wheat plastid 63.89 62.16
HORVU2Hr1G010670.1 Barley plastid 65.56 62.11
KRH01757 Soybean plastid 51.67 62.0
GSMUA_Achr8P18400_001 Banana cytosol 8.89 61.54
KRG99964 Soybean plastid 33.89 61.0
TraesCS2A01G066900.1 Wheat plastid 65.0 60.94
TraesCS2B01G079500.1 Wheat plastid 65.0 60.62
KRG99965 Soybean plastid 43.33 59.54
CDY12612 Canola cytosol 37.78 56.2
HORVU5Hr1G050990.4 Barley plastid 55.56 52.08
PGSC0003DMT400010489 Potato plastid 48.33 51.48
Os12t0291200-00 Rice plastid 26.67 50.0
KRH15458 Soybean plastid 42.22 47.8
HORVU7Hr1G048050.2 Barley plastid 20.56 42.05
Protein Annotations
KEGG:00630+4.1.1.39KEGG:00710+4.1.1.39MapMan:1.2.1.1.2EntrezGene:102600888EntrezGene:102601229Gene3D:3.30.190.10
ProteinID:CAA49414ProteinID:CAA49414.1ProteinID:CAA49415ProteinID:CAA49415.1ProteinID:CAA49416ProteinID:CAA49416.1
GO:GO:0003674GO:GO:0003824GO:GO:0004497GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009507
GO:GO:0009536GO:GO:0009853GO:GO:0009987GO:GO:0015977GO:GO:0015979GO:GO:0016491
GO:GO:0016829GO:GO:0016984GO:GO:0019253GO:GO:0055114InterPro:IPR036385UniProt:P26577
PFAM:PF00101PFAM:PF12338EnsemblPlantsGene:PGSC0003DMG400012666PGSC:PGSC0003DMG400012666EnsemblPlants:PGSC0003DMT400032975PRINTS:PR00152
PANTHER:PTHR31262PANTHER:PTHR31262:SF0InterPro:RuBisCO_scInterPro:RuBisCO_sc_domInterPro:RuBisCO_ssu_NInterPro:RuBisCO_ssu_sf
SMART:SM00961SUPFAM:SSF55239UniParc:UPI00001333E2EMBL:X69760EMBL:X69761EMBL:X69762
RefSeq:XP_006363111.1RefSeq:XP_006363112.1SEG:seg:::
Description
RBCS-2CRibulose bisphosphate carboxylase small chain 2C, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P26577]
Coordinates
chr2:+:41192215..41193945
Molecular Weight (calculated)
20320.3 Da
IEP (calculated)
7.897
GRAVY (calculated)
-0.282
Length
180 amino acids
Sequence
(BLAST)
001: MASSVMSSAA VATRGNGAQA SMVAPFTGLK STASFPVSRK QNLDITSIAS NGGRVRCMQV WPPINMKKYE TLSYLPDLSD EQLLKEVEYL LKNGWVPCLE
101: FETEHGFVYR ENNKSPGYYD GRYWTMWKLP MFGCTDATQV LAEVEEAKKA YPQAWIRIIG FDNVRQVQCI SFIAYKPEGY
Best Arabidopsis Sequence Match ( AT5G38410.1 )
(BLAST)
001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS AAFPVTRKTN KDITSIASNG GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTE A
Arabidopsis Description
Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:B3H5S2]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.