Factsheet for Bra028181.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000638.1-P
Bra000807.1-P
Bra004617.1-P
Bra005001.1-P
Bra006136.1-P
Bra009783.1-P
Bra016938.1-P
Bra020466.1-P
Bra022254.1-P
Bra023354.1-P
Bra025315.1-P
Bra029527.1-P
Bra033264.1-P
Bra040144.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38420.1	Bra033264.1-P	AT1G01440.1	21798944
AT5G38420.1	Bra004617.1-P	AT2G41370.1	21798944
AT5G38420.1	Bra016938.1-P	AT2G41370.1	21798944
AT5G38420.1	Bra040144.1-P	AT3G04240.1	21798944
AT5G38420.1	Bra022254.1-P	AT3G17860.1	21798944
AT5G38420.1	Bra025315.1-P	AT3G27960.1	21798944
AT5G38420.1	Bra000807.1-P	AT4G04890.1	21798944
AT5G38420.1	Bra029527.1-P	AT4G04890.1	21798944
AT5G38420.1	Bra000638.1-P	AT4G08150.1	21798944
AT5G38420.1	Bra006136.1-P	AT5G11980.1	21798944
AT5G38420.1	Bra023354.1-P	AT5G11980.1	21798944
AT5G38420.1	Bra009783.1-P	AT5G24660.1	21798944
AT5G38420.1	Bra020466.1-P	AT5G24660.1	21798944
AT5G38430.1	Bra005001.1-P	AT2G39930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74525	Canola	plastid	100.0	89.5
CDX74532	Canola	plastid	100.0	89.5
CDY01671	Canola	plastid	100.0	89.5
Bra028174.1-P	Field mustard	plastid	98.77	88.4
Bra025431.1-P	Field mustard	plastid	95.06	85.08
Bra028406.1-P	Field mustard	plastid	94.44	84.53
AT5G38430.1	Thale cress	plastid	92.59	82.87
AT5G38420.1	Thale cress	plastid	91.98	82.32
AT5G38410.3	Thale cress	plastid	91.36	79.57
Bra034027.1-P	Field mustard	plastid	88.27	79.01
Bra034029.1-P	Field mustard	plastid	88.27	79.01
GSMUA_Achr8P18400_001	Banana	cytosol	12.35	76.92
Bra034024.1-P	Field mustard	plastid	85.19	76.24
GSMUA_Achr10P...	Banana	plasma membrane	73.46	75.32
GSMUA_Achr2P22730_001	Banana	unclear	72.84	74.68
GSMUA_Achr6P09710_001	Banana	plastid	71.6	73.42
PGSC0003DMT400067905	Potato	plastid	71.6	72.96
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	74.07	66.3
PGSC0003DMT400062138	Potato	cytosol, plastid	73.46	65.75
VIT_17s0000g03690.t01	Wine grape	plastid	72.84	65.56
Solyc03g034220.2.1	Tomato	plastid	72.22	65.0
PGSC0003DMT400032975	Potato	mitochondrion, plastid	72.22	65.0
Solyc02g085950.2.1	Tomato	extracellular	71.6	64.44
Solyc02g063150.2.1	Tomato	nucleus, plastid	70.99	63.54
Os12t0291400-01	Rice	plastid	64.81	60.0
Os12t0291100-01	Rice	plastid	64.2	59.43
Os12t0274700-01	Rice	plastid	64.2	59.43
Zm00001d004894_P001	Maize	plastid	62.35	59.41
KRH46925	Soybean	plastid	32.72	58.89
Os12t0292400-01	Rice	extracellular	63.58	58.86
HORVU2Hr1G010690.1	Barley	plastid	63.58	58.86
HORVU2Hr1G010630.1	Barley	plastid	63.58	58.86
TraesCS2D01G065300.1	Wheat	plastid	62.96	58.62
TraesCS2B01G079300.1	Wheat	plastid	62.96	58.62
TraesCS2A01G066700.1	Wheat	plastid	62.96	58.62
EES09292	Sorghum	plastid	61.11	58.58
TraesCS2D01G065200.1	Wheat	plastid	62.96	58.29
TraesCS2D01G065600.1	Wheat	plastid	62.96	58.29
HORVU5Hr1G051010.2	Barley	plastid	62.96	58.29
TraesCS2B01G079400.1	Wheat	plastid	62.96	58.29
HORVU5Hr1G038630.1	Barley	plastid	62.96	58.29
HORVU5Hr1G033540.2	Barley	plastid	62.96	58.29
TraesCS2B01G079200.1	Wheat	plastid	62.96	58.29
TraesCS2A01G067300.1	Wheat	plastid	62.96	58.29
Zm00001d052595_P001	Maize	plastid	61.11	58.24
TraesCS2D01G065500.1	Wheat	plastid	59.26	58.18
TraesCS2B01G079100.1	Wheat	plastid	62.35	58.05
HORVU1Hr1G035720.2	Barley	plastid	62.96	57.95
TraesCS2A01G067100.1	Wheat	plastid	62.35	57.71
TraesCS2A01G067200.1	Wheat	plastid	62.35	57.71
TraesCS5A01G165700.1	Wheat	plastid	62.35	57.71
TraesCS5A01G165400.2	Wheat	plastid	62.35	57.71
TraesCS2A01G066800.1	Wheat	plastid	62.35	57.71
TraesCS5B01G162600.1	Wheat	plastid	62.35	57.71
TraesCS5B01G162800.1	Wheat	plastid	62.35	57.71
TraesCS5D01G169600.2	Wheat	plastid	62.35	57.71
TraesCS5D01G169900.2	Wheat	plastid	62.35	57.71
TraesCS2D01G065400.1	Wheat	plastid	62.35	57.71
TraesCS2D01G065100.2	Wheat	plastid	61.73	57.47
TraesCS2A01G067000.1	Wheat	plastid	61.73	57.14
TraesCS2B01G078900.2	Wheat	plastid	62.35	54.59
HORVU2Hr1G010670.1	Barley	plastid	63.58	54.21
TraesCS2A01G066900.1	Wheat	plastid	62.96	53.12
TraesCS2B01G079500.1	Wheat	plastid	62.96	52.85
KRH01757	Soybean	plastid	48.77	52.67
KRG99965	Soybean	plastid	38.27	47.33
KRG99964	Soybean	plastid	29.01	47.0
HORVU5Hr1G050990.4	Barley	plastid	52.47	44.27
Os12t0291200-00	Rice	plastid	24.69	41.67
KRH15458	Soybean	plastid	37.65	38.36
HORVU7Hr1G048050.2	Barley	plastid	17.28	31.82

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	Gene3D:3.30.190.10	EnsemblPlantsGene:Bra028181	EnsemblPlants:Bra028181.1
EnsemblPlants:Bra028181.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009853	GO:GO:0009987	GO:GO:0015977	GO:GO:0015979	GO:GO:0016491	GO:GO:0016829
GO:GO:0016984	GO:GO:0055114	InterPro:IPR036385	UniProt:M4EHB6	PFAM:PF00101	PFAM:PF12338
PRINTS:PR00152	PANTHER:PTHR31262	PANTHER:PTHR31262:SF0	InterPro:RuBisCO_sc	InterPro:RuBisCO_sc_dom	InterPro:RuBisCO_ssu_N
InterPro:RuBisCO_ssu_sf	SMART:SM00961	SUPFAM:SSF55239	UniParc:UPI0000EC7D71	:	:

Description

AT5G38430 (E=1e-089) | ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B)

Coordinates

chrA04:-:6422930..6423808

Molecular Weight (calculated)

18436.1 Da

IEP (calculated)

8.187

GRAVY (calculated)

-0.270

Length

162 amino acids

Sequence
(BLAST)

001: MVAPFTGLKS SSAFPVTRKA NNDITSIVSN GGRVSCMKVW PPVGKKKFET LSYLPDLTEV ELGKEVDYLL RNKWIPCVEF ELEHGFVYRE HGSTPGYYDG
101: RYWTMWKLPL FGCTDSAQVL KEVQECKTEY PNAFIRIIGF DNNRQVQCIS FIAYKPPSFT GA

Best Arabidopsis Sequence Match ( AT1G67090.1 )
(BLAST)

001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG

Arabidopsis Description

RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.