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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • plastid 9
  • vacuole 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:mitochondrion, plastid, vacuole
BaCelLo:plastid
ChloroP:plastid
EpiLoc:vacuole
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 cytosol: 22313117
msms PMID: 22313117 doi
S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto
Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400001405
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400012712
PGSC0003DMT400015729
PGSC0003DMT400017657
PGSC0003DMT400021076
PGSC0003DMT400027591
PGSC0003DMT400036790
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400040741
PGSC0003DMT400053345
PGSC0003DMT400069515
PGSC0003DMT400074101
PGSC0003DMT400076710
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G67090.1 PGSC0003DMT400040141 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400040142 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400040143 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400040144 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400040206 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400040207 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400077934 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400015729 AT5G35750.1 18642946
AT5G38420.1 PGSC0003DMT400021076 AT2G41370.1 21798944
AT5G38420.1 PGSC0003DMT400027591 AT2G41370.1 21798944
AT5G38420.1 PGSC0003DMT400076710 AT2G41370.1 21798944
AT5G38420.1 PGSC0003DMT400040741 AT3G04240.1 21798944
AT5G38420.1 PGSC0003DMT400036790 AT3G17860.1 21798944
AT5G38420.1 PGSC0003DMT400074101 AT3G17860.1 21798944
AT5G38420.1 PGSC0003DMT400001405 AT3G27960.1 21798944
AT5G38420.1 PGSC0003DMT400012712 AT4G08150.1 21798944
AT5G38420.1 PGSC0003DMT400017657 AT5G11980.1 21798944
AT5G38420.1 PGSC0003DMT400001474 AT5G24660.1 21798944
AT5G38420.1 PGSC0003DMT400001475 AT5G24660.1 21798944
AT5G38420.1 PGSC0003DMT400001476 AT5G24660.1 21798944
AT5G38420.1 PGSC0003DMT400069515 AT5G24660.1 21798944
AT5G38430.1 PGSC0003DMT400053345 AT2G39930.1 21798944
AT5G38430.1 PGSC0003DMT400040141 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400040142 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400040143 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400040144 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400040206 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400040207 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400077934 AT3G46090.1 17259181
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g063150.2.1 Tomato nucleus, plastid 95.58 95.58
PGSC0003DMT400067905 Potato plastid 81.77 93.08
PGSC0003DMT400032975 Potato mitochondrion, plastid 91.71 92.22
PGSC0003DMT400050381 Potato cytosol, extracellular, plastid 90.61 90.61
KRH18247 Soybean nucleus, plastid 79.01 80.34
KRG93871 Soybean plastid 78.45 79.78
KRG93867 Soybean plastid 78.45 79.78
CDY52468 Canola plastid 75.14 75.14
Bra025431.1-P Field mustard plastid 74.59 74.59
Bra028174.1-P Field mustard plastid 74.03 74.03
AT5G38430.1 Thale cress plastid 74.03 74.03
AT5G38420.1 Thale cress plastid 74.03 74.03
CDY71122 Canola plastid 74.03 74.03
CDY01665 Canola plastid 73.48 73.48
Bra028181.1-P Field mustard plastid 65.75 73.46
GSMUA_Achr2P22730_001 Banana unclear 64.09 73.42
CDX67402 Canola plastid 72.93 72.93
CDX74532 Canola plastid 72.93 72.93
CDY01671 Canola plastid 72.93 72.93
AT5G38410.3 Thale cress plastid 74.59 72.58
CDY67657 Canola plastid 72.38 72.38
Bra028406.1-P Field mustard plastid 72.38 72.38
CDX74525 Canola plastid 72.38 72.38
AT1G67090.1 Thale cress plastid 71.27 71.67
VIT_17s0000g03690.t01 Wine grape plastid 71.27 71.67
CDX99682 Canola plastid 74.59 71.43
KRH46925 Soybean plastid 35.36 71.11
GSMUA_Achr6P09710_001 Banana plastid 61.33 70.25
GSMUA_Achr10P... Banana plasma membrane 60.77 69.62
Bra034027.1-P Field mustard plastid 67.96 67.96
Bra034029.1-P Field mustard plastid 67.96 67.96
CDY12613 Canola plastid 67.96 67.96
KRG93872 Soybean plastid 50.28 67.41
Bra034024.1-P Field mustard plastid 66.85 66.85
Zm00001d004894_P001 Maize plastid 62.43 66.47
CDY12616 Canola plastid 66.3 66.3
Os12t0274700-01 Rice plastid 64.09 66.29
CDY42338 Canola plastid 65.75 65.75
CDY42337 Canola plastid 65.75 65.75
Os12t0291400-01 Rice plastid 63.54 65.71
Os12t0292400-01 Rice extracellular 63.54 65.71
Os12t0291100-01 Rice plastid 62.98 65.14
HORVU1Hr1G035720.2 Barley plastid 62.98 64.77
HORVU2Hr1G010690.1 Barley plastid 62.43 64.57
HORVU5Hr1G051010.2 Barley plastid 62.43 64.57
HORVU5Hr1G038630.1 Barley plastid 62.43 64.57
HORVU5Hr1G033540.2 Barley plastid 62.43 64.57
HORVU2Hr1G010630.1 Barley plastid 62.43 64.57
TraesCS2B01G079300.1 Wheat plastid 61.88 64.37
TraesCS2A01G066700.1 Wheat plastid 61.88 64.37
TraesCS2D01G065300.1 Wheat plastid 61.88 64.37
TraesCS2D01G065500.1 Wheat plastid 58.56 64.24
TraesCS2A01G067300.1 Wheat plastid 61.88 64.0
TraesCS2A01G067200.1 Wheat plastid 61.88 64.0
TraesCS2B01G079200.1 Wheat plastid 61.88 64.0
TraesCS2B01G079400.1 Wheat plastid 61.88 64.0
TraesCS2D01G065200.1 Wheat plastid 61.88 64.0
TraesCS5D01G169900.2 Wheat plastid 61.88 64.0
TraesCS5B01G162600.1 Wheat plastid 61.88 64.0
TraesCS5D01G169600.2 Wheat plastid 61.88 64.0
TraesCS5B01G162800.1 Wheat plastid 61.88 64.0
TraesCS2D01G065600.1 Wheat plastid 61.88 64.0
TraesCS5A01G165400.2 Wheat plastid 61.88 64.0
TraesCS5A01G165700.1 Wheat plastid 61.88 64.0
EES09292 Sorghum plastid 59.67 63.91
KRG93873 Soybean plastid 37.02 63.81
TraesCS2B01G079100.1 Wheat plastid 61.33 63.79
Zm00001d052595_P001 Maize plastid 59.67 63.53
TraesCS2A01G067100.1 Wheat plastid 61.33 63.43
TraesCS2A01G066800.1 Wheat plastid 61.33 63.43
TraesCS2D01G065400.1 Wheat plastid 61.33 63.43
TraesCS2D01G065100.2 Wheat plastid 60.77 63.22
CDY42341 Canola plastid 64.64 62.9
TraesCS2A01G067000.1 Wheat plastid 60.22 62.29
GSMUA_Achr8P18400_001 Banana cytosol 8.84 61.54
KRH01757 Soybean plastid 50.28 60.67
HORVU2Hr1G010670.1 Barley plastid 62.43 59.47
TraesCS2B01G078900.2 Wheat plastid 60.77 59.46
TraesCS2A01G066900.1 Wheat plastid 61.88 58.33
TraesCS2B01G079500.1 Wheat plastid 61.88 58.03
KRG99964 Soybean plastid 32.04 58.0
CDY12612 Canola cytosol 38.12 57.02
KRG99965 Soybean plastid 40.88 56.49
PGSC0003DMT400010489 Potato plastid 47.51 50.89
HORVU5Hr1G050990.4 Barley plastid 53.04 50.0
KRH15458 Soybean plastid 39.78 45.28
Os12t0291200-00 Rice plastid 23.76 44.79
HORVU7Hr1G048050.2 Barley plastid 18.78 38.64
Protein Annotations
KEGG:00630+4.1.1.39KEGG:00710+4.1.1.39MapMan:1.2.1.1.2Gene3D:3.30.190.10ProteinID:AAA33838ProteinID:AAA33838.1
ProteinID:CAA49417ProteinID:CAA49417.1GO:GO:0003674GO:GO:0003824GO:GO:0004497GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009507GO:GO:0009536GO:GO:0009853GO:GO:0009987GO:GO:0015977
GO:GO:0015979GO:GO:0016491GO:GO:0016829GO:GO:0016984GO:GO:0019253GO:GO:0055114
InterPro:IPR036385EMBL:J03613UniProt:M1C8J9PFAM:PF00101PFAM:PF12338EnsemblPlantsGene:PGSC0003DMG400024182
PGSC:PGSC0003DMG400024182EnsemblPlants:PGSC0003DMT400062138PRINTS:PR00152PANTHER:PTHR31262PANTHER:PTHR31262:SF0InterPro:RuBisCO_sc
InterPro:RuBisCO_sc_domInterPro:RuBisCO_ssu_NInterPro:RuBisCO_ssu_sfSMART:SM00961SUPFAM:SSF55239UniParc:UPI000296E8F0
EMBL:X69763SEG:seg::::
Description
Ribulose bisphosphate carboxylase small chain C, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400024182]
Coordinates
chr2:+:21928744..21929625
Molecular Weight (calculated)
20383.3 Da
IEP (calculated)
7.283
GRAVY (calculated)
-0.225
Length
181 amino acids
Sequence
(BLAST)
001: MASSIVSSAA VATRSNVAQA SMVAPFTGLK SAASFPVTKK NNNVDITSLA SNGGRVRCMQ VWPPINMKKY ETLSYLPDLS DEQLLKEVEY LLKNGWVPCL
101: EFETEHGFVY REHNSSPGYY DGRYWTMWKL PMFGCTDATQ VLAEVQEAKN AYPQAWIRII GFDNVRQVQC ISFIAYKPEG Y
Best Arabidopsis Sequence Match ( AT5G38410.1 )
(BLAST)
001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS AAFPVTRKTN KDITSIASNG GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTE A
Arabidopsis Description
Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:B3H5S2]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.