Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G67090.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT1G67090.1 | CDY47297 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034024.1-P | Field mustard | plastid | 93.01 | 95.58 |
| CDY12616 | Canola | plastid | 92.47 | 95.03 |
| CDY12613 | Canola | plastid | 87.63 | 90.06 |
| CDY42337 | Canola | plastid | 83.87 | 86.19 |
| CDY42338 | Canola | plastid | 82.8 | 85.08 |
| CDX67402 | Canola | plastid | 79.57 | 81.77 |
| CDY67657 | Canola | plastid | 79.03 | 81.22 |
| AT1G67090.1 | Thale cress | plastid | 78.49 | 81.11 |
| CDY52468 | Canola | plastid | 78.49 | 80.66 |
| CDY71122 | Canola | plastid | 76.88 | 79.01 |
| CDY01671 | Canola | plastid | 76.34 | 78.45 |
| CDX74532 | Canola | plastid | 76.34 | 78.45 |
| CDY01665 | Canola | plastid | 75.81 | 77.9 |
| CDX74525 | Canola | plastid | 75.81 | 77.9 |
| CDX99682 | Canola | plastid | 77.42 | 76.19 |
| PGSC0003DMT400067905 | Potato | plastid | 58.06 | 67.92 |
| CDY12612 | Canola | cytosol | 44.09 | 67.77 |
| GSMUA_Achr10P... | Banana | plasma membrane | 56.99 | 67.09 |
| GSMUA_Achr2P22730_001 | Banana | unclear | 56.99 | 67.09 |
| GSMUA_Achr6P09710_001 | Banana | plastid | 55.38 | 65.19 |
| PGSC0003DMT400050381 | Potato | cytosol, extracellular, plastid | 62.9 | 64.64 |
| PGSC0003DMT400062138 | Potato | cytosol, plastid | 62.9 | 64.64 |
| PGSC0003DMT400032975 | Potato | mitochondrion, plastid | 62.37 | 64.44 |
| Solyc03g034220.2.1 | Tomato | plastid | 62.37 | 64.44 |
| VIT_17s0000g03690.t01 | Wine grape | plastid | 61.29 | 63.33 |
| Solyc02g085950.2.1 | Tomato | extracellular | 61.29 | 63.33 |
| Solyc02g063150.2.1 | Tomato | nucleus, plastid | 61.29 | 62.98 |
| GSMUA_Achr8P18400_001 | Banana | cytosol | 8.6 | 61.54 |
| TraesCS2A01G067200.1 | Wheat | plastid | 54.84 | 58.29 |
| HORVU1Hr1G035720.2 | Barley | plastid | 54.84 | 57.95 |
| HORVU5Hr1G038630.1 | Barley | plastid | 54.3 | 57.71 |
| HORVU5Hr1G051010.2 | Barley | plastid | 54.3 | 57.71 |
| HORVU5Hr1G033540.2 | Barley | plastid | 54.3 | 57.71 |
| HORVU2Hr1G010690.1 | Barley | plastid | 54.3 | 57.71 |
| HORVU2Hr1G010630.1 | Barley | plastid | 54.3 | 57.71 |
| TraesCS2D01G065500.1 | Wheat | plastid | 51.08 | 57.58 |
| TraesCS2A01G066700.1 | Wheat | plastid | 53.76 | 57.47 |
| TraesCS2B01G079300.1 | Wheat | plastid | 53.76 | 57.47 |
| TraesCS2D01G065300.1 | Wheat | plastid | 53.76 | 57.47 |
| TraesCS2D01G065200.1 | Wheat | plastid | 53.76 | 57.14 |
| TraesCS5A01G165400.2 | Wheat | plastid | 53.76 | 57.14 |
| TraesCS2B01G079400.1 | Wheat | plastid | 53.76 | 57.14 |
| TraesCS5A01G165700.1 | Wheat | plastid | 53.76 | 57.14 |
| TraesCS5B01G162600.1 | Wheat | plastid | 53.76 | 57.14 |
| TraesCS5B01G162800.1 | Wheat | plastid | 53.76 | 57.14 |
| TraesCS5D01G169600.2 | Wheat | plastid | 53.76 | 57.14 |
| TraesCS2D01G065600.1 | Wheat | plastid | 53.76 | 57.14 |
| TraesCS2B01G079200.1 | Wheat | plastid | 53.76 | 57.14 |
| TraesCS5D01G169900.2 | Wheat | plastid | 53.76 | 57.14 |
| TraesCS2A01G067300.1 | Wheat | plastid | 53.76 | 57.14 |
| TraesCS2B01G079100.1 | Wheat | plastid | 53.23 | 56.9 |
| EES09292 | Sorghum | plastid | 51.61 | 56.8 |
| Os12t0291400-01 | Rice | plastid | 53.23 | 56.57 |
| TraesCS2D01G065400.1 | Wheat | plastid | 53.23 | 56.57 |
| TraesCS2A01G067100.1 | Wheat | plastid | 53.23 | 56.57 |
| TraesCS2A01G066800.1 | Wheat | plastid | 53.23 | 56.57 |
| TraesCS2D01G065100.2 | Wheat | plastid | 52.69 | 56.32 |
| Os12t0274700-01 | Rice | plastid | 52.69 | 56.0 |
| Os12t0291100-01 | Rice | plastid | 52.69 | 56.0 |
| Os12t0292400-01 | Rice | extracellular | 52.69 | 56.0 |
| Zm00001d004894_P001 | Maize | plastid | 51.08 | 55.88 |
| TraesCS2A01G067000.1 | Wheat | plastid | 52.15 | 55.43 |
| Zm00001d052595_P001 | Maize | plastid | 50.54 | 55.29 |
| KRH46925 | Soybean | plastid | 26.34 | 54.44 |
| TraesCS2B01G078900.2 | Wheat | plastid | 53.23 | 53.51 |
| HORVU2Hr1G010670.1 | Barley | plastid | 54.3 | 53.16 |
| TraesCS2A01G066900.1 | Wheat | plastid | 53.76 | 52.08 |
| KRH01757 | Soybean | plastid | 41.94 | 52.0 |
| TraesCS2B01G079500.1 | Wheat | plastid | 53.76 | 51.81 |
| KRG99964 | Soybean | plastid | 24.19 | 45.0 |
| KRG99965 | Soybean | plastid | 31.18 | 44.27 |
| HORVU5Hr1G050990.4 | Barley | plastid | 45.16 | 43.75 |
| Os12t0291200-00 | Rice | plastid | 19.89 | 38.54 |
| KRH15458 | Soybean | plastid | 31.72 | 37.11 |
| HORVU7Hr1G048050.2 | Barley | plastid | 15.05 | 31.82 |
Protein Annotations
| KEGG:00630+4.1.1.39 | KEGG:00710+4.1.1.39 | MapMan:1.2.1.1.2 | Gene3D:3.30.190.10 | GO:A0A078HX64 | UniProt:A0A078HX64 |
| EnsemblPlants:CDY42341 | ProteinID:CDY42341 | ProteinID:CDY42341.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004497 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009853 | GO:GO:0009987 | GO:GO:0015977 | GO:GO:0015979 |
| GO:GO:0016491 | GO:GO:0016829 | GO:GO:0016984 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00074605001 | InterPro:IPR036385 |
| PFAM:PF00101 | PFAM:PF12338 | PRINTS:PR00152 | PANTHER:PTHR31262 | PANTHER:PTHR31262:SF0 | MetaCyc:PWY-5532 |
| MetaCyc:PWY-5723 | InterPro:RuBisCO_sc | InterPro:RuBisCO_sc_dom | InterPro:RuBisCO_ssu_N | InterPro:RuBisCO_ssu_sf | SMART:SM00961 |
| SUPFAM:SSF55239 | UniParc:UPI0004EEC9CA | : | : | : | : |
Description
BnaC02g17180DRibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A078HX64]
Coordinates
chrLK032521:-:210220..211247
Molecular Weight (calculated)
20990.4 Da
IEP (calculated)
8.775
GRAVY (calculated)
-0.108
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSVMLSSAT IASSPSHATM VAPFIGLKSS AAFPVTCKAK TKITSITSNG GRVNCMKVIH ISYTQNKLMK KFETLSYLPD LTDVEIAKEV DYLIRNKWTP
101: CIEFELEHTF VYREHGNIPG YYGGRYWTMW KLPLFGCTDS SQVLKEVQEC KKEYPNAFIR IIGFDNNRQA QCISFIAFKP LSFGDA
101: CIEFELEHTF VYREHGNIPG YYGGRYWTMW KLPLFGCTDS SQVLKEVQEC KKEYPNAFIR IIGFDNNRQA QCISFIAFKP LSFGDA
001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
Arabidopsis Description
RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.