Factsheet for HORVU5Hr1G050990.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G021800.1
HORVU1Hr1G092980.14
HORVU2Hr1G061320.3
HORVU2Hr1G067320.4
HORVU3Hr1G055550.3
HORVU3Hr1G106880.5
HORVU4Hr1G003360.1
HORVU4Hr1G003410.3
HORVU4Hr1G009730.1
HORVU4Hr1G087520.3
HORVU5Hr1G025740.13
HORVU5Hr1G060730.3
HORVU5Hr1G098570.6
HORVU6Hr1G069310.1
HORVU7Hr1G051710.1
HORVU7Hr1G082720.10

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38420.1	HORVU0Hr1G021800.1	AT1G01440.1	21798944
AT5G38420.1	HORVU1Hr1G092980.14	AT1G01440.1	21798944
AT5G38420.1	HORVU3Hr1G055550.3	AT1G01440.1	21798944
AT5G38420.1	HORVU7Hr1G082720.10	AT1G01440.1	21798944
AT5G38420.1	HORVU3Hr1G106880.5	AT2G41370.1	21798944
AT5G38420.1	HORVU2Hr1G067320.4	AT3G04240.1	21798944
AT5G38420.1	HORVU4Hr1G087520.3	AT3G17860.1	21798944
AT5G38420.1	HORVU5Hr1G060730.3	AT3G17860.1	21798944
AT5G38420.1	HORVU6Hr1G069310.1	AT3G27960.1	21798944
AT5G38420.1	HORVU2Hr1G061320.3	AT4G08150.1	21798944
AT5G38420.1	HORVU4Hr1G003360.1	AT4G08150.1	21798944
AT5G38420.1	HORVU4Hr1G003410.3	AT4G08150.1	21798944
AT5G38420.1	HORVU4Hr1G009730.1	AT4G08150.1	21798944
AT5G38420.1	HORVU5Hr1G098570.6	AT4G08150.1	21798944
AT5G38420.1	HORVU5Hr1G025740.13	AT5G11980.1	21798944
AT5G38430.1	HORVU7Hr1G051710.1	AT2G39930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G051010.2	Barley	plastid	73.96	81.14
HORVU5Hr1G038630.1	Barley	plastid	73.96	81.14
HORVU5Hr1G033540.2	Barley	plastid	73.44	80.57
HORVU1Hr1G035720.2	Barley	plastid	70.83	77.27
GSMUA_Achr8P18400_001	Banana	cytosol	10.42	76.92
HORVU2Hr1G010690.1	Barley	plastid	69.79	76.57
HORVU2Hr1G010630.1	Barley	plastid	69.79	76.57
Os12t0291400-01	Rice	plastid	64.58	70.86
HORVU2Hr1G010670.1	Barley	plastid	69.79	70.53
Os12t0292400-01	Rice	extracellular	62.5	68.57
Os12t0291100-01	Rice	plastid	62.5	68.57
Zm00001d052595_P001	Maize	plastid	60.42	68.24
EES09292	Sorghum	plastid	59.9	68.05
Os12t0274700-01	Rice	plastid	61.46	67.43
Zm00001d004894_P001	Maize	plastid	59.38	67.06
Os12t0291200-00	Rice	plastid	30.21	60.42
GSMUA_Achr6P09710_001	Banana	plastid	48.96	59.49
GSMUA_Achr10P...	Banana	plasma membrane	48.96	59.49
PGSC0003DMT400067905	Potato	plastid	48.44	58.49
GSMUA_Achr2P22730_001	Banana	unclear	47.92	58.23
PGSC0003DMT400032975	Potato	mitochondrion, plastid	52.08	55.56
PGSC0003DMT400062138	Potato	cytosol, plastid	50.0	53.04
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	50.0	53.04
Bra028181.1-P	Field mustard	plastid	44.27	52.47
KRH18247	Soybean	nucleus, plastid	48.44	52.25
KRG93871	Soybean	plastid	48.44	52.25
KRG93867	Soybean	plastid	48.44	52.25
VIT_17s0000g03690.t01	Wine grape	plastid	48.96	52.22
AT1G67090.1	Thale cress	plastid	48.96	52.22
Solyc02g063150.2.1	Tomato	nucleus, plastid	48.96	51.93
Solyc02g085950.2.1	Tomato	extracellular	48.44	51.67
AT5G38420.1	Thale cress	plastid	48.44	51.38
Solyc03g034220.2.1	Tomato	plastid	47.92	51.11
KRH46925	Soybean	plastid	23.96	51.11
AT5G38430.1	Thale cress	plastid	47.92	50.83
AT5G38410.3	Thale cress	plastid	48.96	50.54
CDY71122	Canola	plastid	47.4	50.28
CDY52468	Canola	plastid	47.4	50.28
CDY42338	Canola	plastid	47.4	50.28
Bra028174.1-P	Field mustard	plastid	47.4	50.28
CDY01665	Canola	plastid	47.4	50.28
CDX74532	Canola	plastid	46.88	49.72
Bra034029.1-P	Field mustard	plastid	46.88	49.72
CDX74525	Canola	plastid	46.88	49.72
CDY01671	Canola	plastid	46.88	49.72
CDY12613	Canola	plastid	46.88	49.72
CDY67657	Canola	plastid	46.88	49.72
CDX67402	Canola	plastid	46.88	49.72
Bra034027.1-P	Field mustard	plastid	46.88	49.72
Bra025431.1-P	Field mustard	plastid	46.88	49.72
Bra028406.1-P	Field mustard	plastid	46.35	49.17
Bra034024.1-P	Field mustard	plastid	45.83	48.62
CDY12616	Canola	plastid	45.83	48.62
KRG93873	Soybean	plastid	26.56	48.57
CDY42337	Canola	plastid	45.31	48.07
CDX99682	Canola	plastid	46.88	47.62
HORVU7Hr1G048050.2	Barley	plastid	20.83	45.45
CDY42341	Canola	plastid	43.75	45.16
KRG99965	Soybean	plastid	29.69	43.51
KRG99964	Soybean	plastid	22.4	43.0
KRG93872	Soybean	plastid	30.21	42.96
CDY12612	Canola	cytosol	26.56	42.15
KRH01757	Soybean	plastid	28.65	36.67
KRH15458	Soybean	plastid	28.12	33.96

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	Gene3D:3.30.190.10	UniProt:A0A287R6Q6	GO:GO:0003674
GO:GO:0003824	GO:GO:0004497	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009853	GO:GO:0009987
GO:GO:0015977	GO:GO:0015979	GO:GO:0016491	GO:GO:0016829	GO:GO:0016984	GO:GO:0055114
EnsemblPlantsGene:HORVU5Hr1G050990	EnsemblPlants:HORVU5Hr1G050990.4	InterPro:IPR036385	PFAM:PF00101	PFAM:PF12338	PRINTS:PR00152
PANTHER:PTHR31262	InterPro:RuBisCO_sc	InterPro:RuBisCO_sc_dom	InterPro:RuBisCO_ssu_N	InterPro:RuBisCO_ssu_sf	SMART:SM00961
SUPFAM:SSF55239	UniParc:UPI000B485217	SEG:seg	:	:	:

Description

Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A287R6Q6]

Coordinates

chrchr5H:+:398416766..398417705

Molecular Weight (calculated)

21053.3 Da

IEP (calculated)

8.684

GRAVY (calculated)

-0.092

Length

192 amino acids

Sequence
(BLAST)

001: MAPTVMASSA TSVAPFQGLK STAGLPVSRR SNGASLGSVS NGGRIRCMQV WPIEGIKKFE TLSYLPPLST EALLKQVDYL IRSKWVPCLE FSKVGFIFRE
101: HNASPGYYDG RYWTMWKLPM FGCTDATQVL NEVEEVRCSA SASSPSSHQA ARSPARHKQL TDDGPHIKCH CSFVNSDIAL GFPSPFIFLI CS

Best Arabidopsis Sequence Match ( AT1G67090.1 )
(BLAST)

001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG

Arabidopsis Description

RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.