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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70438
CDX74820
CDX78461
CDX79940
CDX80461
CDX83145
CDX86457
CDX90032
CDX90879
CDX91181
CDX92171
CDX94586
CDX95810
CDY05402
CDY05452
CDY06929
CDY14765
CDY15177
CDY16639
CDY20500
CDY21133
CDY21319
CDY23854
CDY29989
CDY34012
CDY58518
CDY67814
CDY68624
CDY69515

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G38420.1 CDX90032 AT1G01440.1 21798944
AT5G38420.1 CDY15177 AT1G01440.1 21798944
AT5G38420.1 CDX79940 AT2G41370.1 21798944
AT5G38420.1 CDY06929 AT2G41370.1 21798944
AT5G38420.1 CDY14765 AT2G41370.1 21798944
AT5G38420.1 CDY23854 AT2G41370.1 21798944
AT5G38420.1 CDY21133 AT3G04240.1 21798944
AT5G38420.1 CDY29989 AT3G04240.1 21798944
AT5G38420.1 CDX92171 AT3G17860.1 21798944
AT5G38420.1 CDX95810 AT3G17860.1 21798944
AT5G38420.1 CDX86457 AT3G27960.1 21798944
AT5G38420.1 CDY58518 AT3G27960.1 21798944
AT5G38420.1 CDX90879 AT4G04890.1 21798944
AT5G38420.1 CDX94586 AT4G04890.1 21798944
AT5G38420.1 CDY16639 AT4G04890.1 21798944
AT5G38420.1 CDY21319 AT4G04890.1 21798944
AT5G38420.1 CDX83145 AT4G08150.1 21798944
AT5G38420.1 CDY34012 AT4G08150.1 21798944
AT5G38420.1 CDY68624 AT4G08150.1 21798944
AT5G38420.1 CDX70438 AT5G11980.1 21798944
AT5G38420.1 CDX78461 AT5G11980.1 21798944
AT5G38420.1 CDX91181 AT5G11980.1 21798944
AT5G38420.1 CDY67814 AT5G11980.1 21798944
AT5G38420.1 CDX80461 AT5G24660.1 21798944
AT5G38420.1 CDY05402 AT5G24660.1 21798944
AT5G38420.1 CDY05452 AT5G24660.1 21798944
AT5G38420.1 CDY69515 AT5G24660.1 21798944
AT5G38430.1 CDX74820 AT2G39930.1 21798944
AT5G38430.1 CDY20500 AT2G39930.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY52468 Canola plastid 94.18 98.34
Bra025431.1-P Field mustard plastid 93.12 97.24
CDY71122 Canola plastid 91.53 95.58
CDX67402 Canola plastid 90.48 94.48
CDX74532 Canola plastid 90.48 94.48
CDY01671 Canola plastid 90.48 94.48
CDX74525 Canola plastid 89.95 93.92
CDY01665 Canola plastid 88.89 92.82
AT5G38430.1 Thale cress plastid 88.36 92.27
CDY67657 Canola plastid 88.36 92.27
AT5G38420.1 Thale cress plastid 86.77 90.61
AT5G38410.3 Thale cress plastid 88.89 90.32
CDY12613 Canola plastid 83.6 87.29
CDY42337 Canola plastid 79.89 83.43
CDY42338 Canola plastid 79.37 82.87
CDY12616 Canola plastid 79.37 82.87
CDY42341 Canola plastid 76.19 77.42
GSMUA_Achr8P18400_001 Banana cytosol 10.58 76.92
GSMUA_Achr10P... Banana plasma membrane 62.43 74.68
PGSC0003DMT400062138 Potato cytosol, plastid 71.43 74.59
PGSC0003DMT400067905 Potato plastid 62.43 74.21
GSMUA_Achr2P22730_001 Banana unclear 61.9 74.05
PGSC0003DMT400050381 Potato cytosol, extracellular, plastid 70.9 74.03
PGSC0003DMT400032975 Potato mitochondrion, plastid 70.37 73.89
VIT_17s0000g03690.t01 Wine grape plastid 70.37 73.89
Solyc03g034220.2.1 Tomato plastid 69.84 73.33
Solyc02g085950.2.1 Tomato extracellular 69.84 73.33
GSMUA_Achr6P09710_001 Banana plastid 60.32 72.15
Solyc02g063150.2.1 Tomato nucleus, plastid 68.78 71.82
KRH46925 Soybean plastid 33.86 71.11
CDY12612 Canola cytosol 44.44 69.42
Os12t0292400-01 Rice extracellular 58.73 63.43
Os12t0291400-01 Rice plastid 58.73 63.43
Os12t0274700-01 Rice plastid 58.73 63.43
Os12t0291100-01 Rice plastid 58.2 62.86
Zm00001d004894_P001 Maize plastid 56.08 62.35
TraesCS2D01G065200.1 Wheat plastid 57.14 61.71
TraesCS2B01G079200.1 Wheat plastid 57.14 61.71
HORVU2Hr1G010690.1 Barley plastid 57.14 61.71
HORVU2Hr1G010630.1 Barley plastid 57.14 61.71
EES09292 Sorghum plastid 55.03 61.54
TraesCS2A01G066700.1 Wheat plastid 56.61 61.49
TraesCS2D01G065300.1 Wheat plastid 56.61 61.49
TraesCS2B01G079300.1 Wheat plastid 56.61 61.49
HORVU1Hr1G035720.2 Barley plastid 57.14 61.36
TraesCS2D01G065500.1 Wheat plastid 53.44 61.21
Zm00001d052595_P001 Maize plastid 55.03 61.18
TraesCS2D01G065600.1 Wheat plastid 56.61 61.14
TraesCS2B01G079400.1 Wheat plastid 56.61 61.14
TraesCS2A01G066800.1 Wheat plastid 56.61 61.14
TraesCS2A01G067300.1 Wheat plastid 56.61 61.14
TraesCS2A01G067200.1 Wheat plastid 56.61 61.14
HORVU5Hr1G033540.2 Barley plastid 56.61 61.14
HORVU5Hr1G038630.1 Barley plastid 56.61 61.14
HORVU5Hr1G051010.2 Barley plastid 56.61 61.14
TraesCS2B01G079100.1 Wheat plastid 56.08 60.92
TraesCS5A01G165400.2 Wheat plastid 56.08 60.57
TraesCS2A01G067100.1 Wheat plastid 56.08 60.57
TraesCS5A01G165700.1 Wheat plastid 56.08 60.57
TraesCS5B01G162600.1 Wheat plastid 56.08 60.57
TraesCS5B01G162800.1 Wheat plastid 56.08 60.57
TraesCS5D01G169600.2 Wheat plastid 56.08 60.57
TraesCS5D01G169900.2 Wheat plastid 56.08 60.57
TraesCS2D01G065400.1 Wheat plastid 56.08 60.57
TraesCS2D01G065100.2 Wheat plastid 55.56 60.34
KRH01757 Soybean plastid 47.62 60.0
TraesCS2A01G067000.1 Wheat plastid 55.03 59.43
KRG99964 Soybean plastid 30.69 58.0
TraesCS2B01G078900.2 Wheat plastid 56.61 57.84
HORVU2Hr1G010670.1 Barley plastid 57.14 56.84
TraesCS2A01G066900.1 Wheat plastid 56.61 55.73
KRG99965 Soybean plastid 38.62 55.73
TraesCS2B01G079500.1 Wheat plastid 56.61 55.44
Os12t0291200-00 Rice plastid 24.34 47.92
HORVU5Hr1G050990.4 Barley plastid 47.62 46.88
KRH15458 Soybean plastid 38.1 45.28
HORVU7Hr1G048050.2 Barley plastid 16.93 36.36
Protein Annotations
KEGG:00630+4.1.1.39KEGG:00710+4.1.1.39MapMan:1.2.1.1.2Gene3D:3.30.190.10GO:A0A078EF67EnsemblPlants:CDX99682
ProteinID:CDX99682ProteinID:CDX99682.1GO:GO:0008150GO:GO:0008152GO:GO:0009853GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00108243001InterPro:IPR036385PFAM:PF00101PFAM:PF12338PRINTS:PR00152PANTHER:PTHR31262
PANTHER:PTHR31262:SF0MetaCyc:PWY-5532MetaCyc:PWY-5723InterPro:RuBisCO_scInterPro:RuBisCO_sc_domInterPro:RuBisCO_ssu_N
InterPro:RuBisCO_ssu_sfSMART:SM00961SUPFAM:SSF55239UniParc:UPI0004EB4824SEG:seg:
Description
BnaC04g34390D
Coordinates
chrLK031912:+:1128286..1129895
Molecular Weight (calculated)
21141.3 Da
IEP (calculated)
8.695
GRAVY (calculated)
-0.241
Length
189 amino acids
Sequence
(BLAST)
001: MASSMLSSAA VATSPAQATM VAPFTGLKSS AAFPVTRKSN TDITSIANNG GRVSCMKVWP PVGKKKFETL SYLPDLTDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GSTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVQECKTEYP NAFIRIIGFD NNRQVQCISF IAYKPPSFTV NPGRKGWST
Best Arabidopsis Sequence Match ( AT5G38410.1 )
(BLAST)
001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS AAFPVTRKTN KDITSIASNG GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTE A
Arabidopsis Description
Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:B3H5S2]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.