Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22160430
plastid: 22736107 plastid: 27562633 |
msms PMID:
22736107
doi
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.
msms PMID:
22160430
doi
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
msms PMID:
27562633
doi
Bio-Tech Research Center, Shandong Academy of Agricultural Science, Shandong Provincial Key Laboratory of Genetic Improvement, Ecology and Physiology of Crop, Jinan, 250100, China., The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Science, Shandong University, 27 Shandanan Road, Jinan, Shandong 250100, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G079400.1 | Wheat | plastid | 98.86 | 98.86 |
| TraesCS2A01G067300.1 | Wheat | plastid | 98.86 | 98.86 |
| TraesCS2A01G067100.1 | Wheat | plastid | 97.71 | 97.71 |
| TraesCS2A01G066700.1 | Wheat | plastid | 96.57 | 97.13 |
| TraesCS2A01G067000.1 | Wheat | plastid | 96.57 | 96.57 |
| TraesCS2A01G066800.1 | Wheat | plastid | 96.0 | 96.0 |
| TraesCS5A01G165700.1 | Wheat | plastid | 92.57 | 92.57 |
| TraesCS5A01G165400.2 | Wheat | plastid | 92.57 | 92.57 |
| TraesCS2A01G066900.1 | Wheat | plastid | 96.57 | 88.02 |
| Os12t0291400-01 | Rice | plastid | 82.86 | 82.86 |
| Os12t0274700-01 | Rice | plastid | 81.14 | 81.14 |
| Os12t0291100-01 | Rice | plastid | 81.14 | 81.14 |
| Os12t0292400-01 | Rice | extracellular | 81.14 | 81.14 |
| GSMUA_Achr8P18400_001 | Banana | cytosol | 11.43 | 76.92 |
| Zm00001d052595_P001 | Maize | plastid | 73.71 | 75.88 |
| Zm00001d004894_P001 | Maize | plastid | 73.14 | 75.29 |
| EES09292 | Sorghum | plastid | 72.57 | 75.15 |
| GSMUA_Achr10P... | Banana | plasma membrane | 64.57 | 71.52 |
| GSMUA_Achr6P09710_001 | Banana | plastid | 64.0 | 70.89 |
| GSMUA_Achr2P22730_001 | Banana | unclear | 62.29 | 68.99 |
| PGSC0003DMT400067905 | Potato | plastid | 62.29 | 68.55 |
| PGSC0003DMT400032975 | Potato | mitochondrion, plastid | 66.29 | 64.44 |
| Bra028181.1-P | Field mustard | plastid | 57.71 | 62.35 |
| PGSC0003DMT400062138 | Potato | cytosol, plastid | 64.0 | 61.88 |
| Solyc02g063150.2.1 | Tomato | nucleus, plastid | 63.43 | 61.33 |
| PGSC0003DMT400050381 | Potato | cytosol, extracellular, plastid | 63.43 | 61.33 |
| Solyc02g085950.2.1 | Tomato | extracellular | 62.86 | 61.11 |
| Solyc03g034220.2.1 | Tomato | plastid | 62.86 | 61.11 |
| AT1G67090.1 | Thale cress | plastid | 62.86 | 61.11 |
| AT5G38420.1 | Thale cress | plastid | 62.86 | 60.77 |
| KRH18247 | Soybean | nucleus, plastid | 61.14 | 60.11 |
| KRG93871 | Soybean | plastid | 61.14 | 60.11 |
| KRG93867 | Soybean | plastid | 61.14 | 60.11 |
| AT5G38410.3 | Thale cress | plastid | 63.43 | 59.68 |
| CDY12613 | Canola | plastid | 61.71 | 59.67 |
| AT5G38430.1 | Thale cress | plastid | 61.71 | 59.67 |
| Bra034027.1-P | Field mustard | plastid | 61.71 | 59.67 |
| Bra034029.1-P | Field mustard | plastid | 61.71 | 59.67 |
| CDY42338 | Canola | plastid | 61.71 | 59.67 |
| CDY52468 | Canola | plastid | 61.71 | 59.67 |
| CDY67657 | Canola | plastid | 61.14 | 59.12 |
| CDY71122 | Canola | plastid | 61.14 | 59.12 |
| Bra025431.1-P | Field mustard | plastid | 61.14 | 59.12 |
| Bra028174.1-P | Field mustard | plastid | 61.14 | 59.12 |
| CDY01665 | Canola | plastid | 61.14 | 59.12 |
| CDY01671 | Canola | plastid | 60.57 | 58.56 |
| CDX74532 | Canola | plastid | 60.57 | 58.56 |
| CDX74525 | Canola | plastid | 60.57 | 58.56 |
| CDX67402 | Canola | plastid | 60.57 | 58.56 |
| Os12t0291200-00 | Rice | plastid | 32.0 | 58.33 |
| VIT_17s0000g03690.t01 | Wine grape | plastid | 60.0 | 58.33 |
| CDY12616 | Canola | plastid | 60.0 | 58.01 |
| Bra028406.1-P | Field mustard | plastid | 60.0 | 58.01 |
| Bra034024.1-P | Field mustard | plastid | 60.0 | 58.01 |
| CDY42337 | Canola | plastid | 59.43 | 57.46 |
| CDX99682 | Canola | plastid | 61.14 | 56.61 |
| CDY42341 | Canola | plastid | 58.29 | 54.84 |
| CDY12612 | Canola | cytosol | 37.71 | 54.55 |
| KRG93872 | Soybean | plastid | 39.43 | 51.11 |
| KRH46925 | Soybean | plastid | 25.71 | 50.0 |
| KRG93873 | Soybean | plastid | 29.14 | 48.57 |
| KRH01757 | Soybean | plastid | 40.57 | 47.33 |
| KRG99965 | Soybean | plastid | 32.57 | 43.51 |
| KRG99964 | Soybean | plastid | 24.0 | 42.0 |
| KRH15458 | Soybean | plastid | 32.0 | 35.22 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G067200.1 | EnsemblPlantsGene:TraesCS2A01G067200 | Gene3D:3.30.190.10 | InterPro:IPR036385 | InterPro:RuBisCO_sc | InterPro:RuBisCO_sc_dom |
| InterPro:RuBisCO_ssu_N | InterPro:RuBisCO_ssu_sf | KEGG:00630+4.1.1.39 | KEGG:00710+4.1.1.39 | PANTHER:PTHR31262 | PANTHER:PTHR31262:SF0 |
| PFAM:PF00101 | PFAM:PF12338 | PRINTS:PR00152 | SMART:SM00961 | SUPFAM:SSF55239 | TIGR:cd03527 |
| MapMan:1.2.1.1.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2A:-:30089910..30092099
Molecular Weight (calculated)
19441.4 Da
IEP (calculated)
8.352
GRAVY (calculated)
-0.114
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPAVMASSA TTVAPFQGLK STAGLPVSCR SGSTGLSSVS NGGRIRCMQV WPIEGIKKFE TLSYLPPLST EALLKQVDYL IRSKWVPCLE FSKVGFVFRE
101: HNSSPGYYDG RYWTMWKLPM FGCTDATQVL NEVEEVKKEY PDAYVRVIGF DNMRQVQCVS FIAFRPPGCE ESGKA
101: HNSSPGYYDG RYWTMWKLPM FGCTDATQVL NEVEEVKKEY PDAYVRVIGF DNMRQVQCVS FIAFRPPGCE ESGKA
001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
Arabidopsis Description
RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.