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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
  • nucleus 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:nucleus, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
EpiLoc:nucleus
iPSORT:secretory
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70438
CDX74820
CDX78461
CDX79940
CDX80461
CDX83145
CDX86457
CDX90032
CDX90879
CDX91181
CDX92171
CDX94586
CDX95810
CDY05402
CDY05452
CDY06929
CDY14765
CDY15177
CDY16639
CDY20500
CDY21133
CDY21319
CDY23854
CDY29989
CDY34012
CDY58518
CDY67814
CDY68624
CDY69515

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G38420.1 CDX90032 AT1G01440.1 21798944
AT5G38420.1 CDY15177 AT1G01440.1 21798944
AT5G38420.1 CDX79940 AT2G41370.1 21798944
AT5G38420.1 CDY06929 AT2G41370.1 21798944
AT5G38420.1 CDY14765 AT2G41370.1 21798944
AT5G38420.1 CDY23854 AT2G41370.1 21798944
AT5G38420.1 CDY21133 AT3G04240.1 21798944
AT5G38420.1 CDY29989 AT3G04240.1 21798944
AT5G38420.1 CDX92171 AT3G17860.1 21798944
AT5G38420.1 CDX95810 AT3G17860.1 21798944
AT5G38420.1 CDX86457 AT3G27960.1 21798944
AT5G38420.1 CDY58518 AT3G27960.1 21798944
AT5G38420.1 CDX90879 AT4G04890.1 21798944
AT5G38420.1 CDX94586 AT4G04890.1 21798944
AT5G38420.1 CDY16639 AT4G04890.1 21798944
AT5G38420.1 CDY21319 AT4G04890.1 21798944
AT5G38420.1 CDX83145 AT4G08150.1 21798944
AT5G38420.1 CDY34012 AT4G08150.1 21798944
AT5G38420.1 CDY68624 AT4G08150.1 21798944
AT5G38420.1 CDX70438 AT5G11980.1 21798944
AT5G38420.1 CDX78461 AT5G11980.1 21798944
AT5G38420.1 CDX91181 AT5G11980.1 21798944
AT5G38420.1 CDY67814 AT5G11980.1 21798944
AT5G38420.1 CDX80461 AT5G24660.1 21798944
AT5G38420.1 CDY05402 AT5G24660.1 21798944
AT5G38420.1 CDY05452 AT5G24660.1 21798944
AT5G38420.1 CDY69515 AT5G24660.1 21798944
AT5G38430.1 CDX74820 AT2G39930.1 21798944
AT5G38430.1 CDY20500 AT2G39930.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra028174.1-P Field mustard plastid 100.0 100.0
CDX74532 Canola plastid 98.89 98.89
CDY01671 Canola plastid 98.89 98.89
CDX74525 Canola plastid 98.34 98.34
CDY01665 Canola plastid 97.24 97.24
CDY52468 Canola plastid 97.24 97.24
CDX67402 Canola plastid 95.03 95.03
AT5G38430.1 Thale cress plastid 93.92 93.92
CDY67657 Canola plastid 93.37 93.37
AT5G38420.1 Thale cress plastid 92.27 92.27
CDX99682 Canola plastid 95.58 91.53
AT5G38410.3 Thale cress plastid 93.37 90.86
CDY12613 Canola plastid 86.74 86.74
CDY42337 Canola plastid 83.43 83.43
CDY42338 Canola plastid 82.87 82.87
CDY12616 Canola plastid 82.32 82.32
GSMUA_Achr8P18400_001 Banana cytosol 11.05 76.92
CDY42341 Canola plastid 79.01 76.88
GSMUA_Achr10P... Banana plasma membrane 65.19 74.68
PGSC0003DMT400067905 Potato plastid 65.19 74.21
GSMUA_Achr2P22730_001 Banana unclear 64.64 74.05
PGSC0003DMT400062138 Potato cytosol, plastid 74.03 74.03
PGSC0003DMT400050381 Potato cytosol, extracellular, plastid 73.48 73.48
PGSC0003DMT400032975 Potato mitochondrion, plastid 72.93 73.33
VIT_17s0000g03690.t01 Wine grape plastid 72.93 73.33
GSMUA_Achr6P09710_001 Banana plastid 63.54 72.78
Solyc03g034220.2.1 Tomato plastid 72.38 72.78
Solyc02g085950.2.1 Tomato extracellular 72.38 72.78
KRH46925 Soybean plastid 35.91 72.22
Solyc02g063150.2.1 Tomato nucleus, plastid 71.27 71.27
CDY12612 Canola cytosol 46.96 70.25
Os12t0291400-01 Rice plastid 61.33 63.43
Os12t0274700-01 Rice plastid 61.33 63.43
Zm00001d004894_P001 Maize plastid 59.12 62.94
Os12t0292400-01 Rice extracellular 60.77 62.86
Os12t0291100-01 Rice plastid 60.77 62.86
HORVU2Hr1G010690.1 Barley plastid 60.22 62.29
HORVU2Hr1G010630.1 Barley plastid 60.22 62.29
EES09292 Sorghum plastid 58.01 62.13
TraesCS2D01G065300.1 Wheat plastid 59.67 62.07
TraesCS2B01G079300.1 Wheat plastid 59.67 62.07
TraesCS2A01G066700.1 Wheat plastid 59.67 62.07
HORVU1Hr1G035720.2 Barley plastid 60.22 61.93
TraesCS2D01G065500.1 Wheat plastid 56.35 61.82
Zm00001d052595_P001 Maize plastid 58.01 61.76
TraesCS2A01G067300.1 Wheat plastid 59.67 61.71
TraesCS2D01G065600.1 Wheat plastid 59.67 61.71
TraesCS2B01G079200.1 Wheat plastid 59.67 61.71
TraesCS2B01G079400.1 Wheat plastid 59.67 61.71
HORVU5Hr1G033540.2 Barley plastid 59.67 61.71
HORVU5Hr1G038630.1 Barley plastid 59.67 61.71
HORVU5Hr1G051010.2 Barley plastid 59.67 61.71
TraesCS2D01G065200.1 Wheat plastid 59.67 61.71
TraesCS2B01G079100.1 Wheat plastid 59.12 61.49
TraesCS2D01G065400.1 Wheat plastid 59.12 61.14
TraesCS2A01G067200.1 Wheat plastid 59.12 61.14
TraesCS2A01G067100.1 Wheat plastid 59.12 61.14
TraesCS5A01G165400.2 Wheat plastid 59.12 61.14
TraesCS5A01G165700.1 Wheat plastid 59.12 61.14
TraesCS2A01G066800.1 Wheat plastid 59.12 61.14
TraesCS5B01G162600.1 Wheat plastid 59.12 61.14
TraesCS5B01G162800.1 Wheat plastid 59.12 61.14
TraesCS5D01G169600.2 Wheat plastid 59.12 61.14
TraesCS5D01G169900.2 Wheat plastid 59.12 61.14
TraesCS2D01G065100.2 Wheat plastid 58.56 60.92
KRH01757 Soybean plastid 50.28 60.67
TraesCS2A01G067000.1 Wheat plastid 58.01 60.0
KRG99964 Soybean plastid 32.04 58.0
TraesCS2B01G078900.2 Wheat plastid 59.12 57.84
HORVU2Hr1G010670.1 Barley plastid 60.22 57.37
TraesCS2A01G066900.1 Wheat plastid 59.67 56.25
TraesCS2B01G079500.1 Wheat plastid 59.67 55.96
KRG99965 Soybean plastid 40.33 55.73
Os12t0291200-00 Rice plastid 25.41 47.92
HORVU5Hr1G050990.4 Barley plastid 50.28 47.4
KRH15458 Soybean plastid 40.33 45.91
HORVU7Hr1G048050.2 Barley plastid 18.23 37.5
Protein Annotations
KEGG:00630+4.1.1.39KEGG:00710+4.1.1.39MapMan:1.2.1.1.2Gene3D:3.30.190.10GO:A0A078JZM9UniProt:A0A078JZM9
unigene:Bna.3843ProteinID:CAA39402.1EnsemblPlants:CDY71122ProteinID:CDY71122ProteinID:CDY71122.1GO:GO:0003674
GO:GO:0003824GO:GO:0004497GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009507GO:GO:0009536
GO:GO:0009853GO:GO:0009987GO:GO:0015977GO:GO:0015979GO:GO:0016491GO:GO:0016829
GO:GO:0016984GO:GO:0019253GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00011400001InterPro:IPR036385UniProt:P27985
PFAM:PF00101PFAM:PF12338PRINTS:PR00152PANTHER:PTHR31262PANTHER:PTHR31262:SF0MetaCyc:PWY-5532
MetaCyc:PWY-5723InterPro:RuBisCO_scInterPro:RuBisCO_sc_domInterPro:RuBisCO_ssu_NInterPro:RuBisCO_ssu_sfSMART:SM00961
SUPFAM:SSF55239UniParc:UPI00001333ACSEG:seg:::
Description
BnaAnng36210DRibulose bisphosphate carboxylase small chain F1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P27985]
Coordinates
chrLK044562:+:1359..2501
Molecular Weight (calculated)
20184.2 Da
IEP (calculated)
8.187
GRAVY (calculated)
-0.160
Length
181 amino acids
Sequence
(BLAST)
001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS AAFPVTRKAN NDITSIASNG GRVSCMKVWP PVGKKKFETL SYLPDLTEVE LGKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GSTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVQECKTEYP NAFIRIIGFD NNRQVQCISF IAYKPPSFTG A
Best Arabidopsis Sequence Match ( AT5G38430.1 )
(BLAST)
001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS ASFPVTRKAN NDITSITSNG GRVSCMKVWP PIGKKKFETL SYLPDLTDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTD A
Arabidopsis Description
RBCS-1BRibulose bisphosphate carboxylase small chain 1B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10796]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.