Factsheet for HORVU2Hr1G010670.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
TargetP:	plastid
YLoc:	plastid

plastid: 17675669

msms PMID: 17675669 doi

S Frigerio, C Campoli, S Zorzan, LI Fantoni, C Crosatti, F Drepper, W Haehnel, L Cattivelli, T Morosinotto, R Bassi

LGBP, UMR 6191 CEA-CNRS-Université de la Méditerranée, Marseille 13288, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G021800.1
HORVU1Hr1G092980.14
HORVU2Hr1G061320.3
HORVU2Hr1G067320.4
HORVU3Hr1G055550.3
HORVU3Hr1G106880.5
HORVU4Hr1G003360.1
HORVU4Hr1G003410.3
HORVU4Hr1G009730.1
HORVU4Hr1G087520.3
HORVU5Hr1G025740.13
HORVU5Hr1G060730.3
HORVU5Hr1G098570.6
HORVU6Hr1G069310.1
HORVU7Hr1G051710.1
HORVU7Hr1G082720.10

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38420.1	HORVU0Hr1G021800.1	AT1G01440.1	21798944
AT5G38420.1	HORVU1Hr1G092980.14	AT1G01440.1	21798944
AT5G38420.1	HORVU3Hr1G055550.3	AT1G01440.1	21798944
AT5G38420.1	HORVU7Hr1G082720.10	AT1G01440.1	21798944
AT5G38420.1	HORVU3Hr1G106880.5	AT2G41370.1	21798944
AT5G38420.1	HORVU2Hr1G067320.4	AT3G04240.1	21798944
AT5G38420.1	HORVU4Hr1G087520.3	AT3G17860.1	21798944
AT5G38420.1	HORVU5Hr1G060730.3	AT3G17860.1	21798944
AT5G38420.1	HORVU6Hr1G069310.1	AT3G27960.1	21798944
AT5G38420.1	HORVU2Hr1G061320.3	AT4G08150.1	21798944
AT5G38420.1	HORVU4Hr1G003360.1	AT4G08150.1	21798944
AT5G38420.1	HORVU4Hr1G003410.3	AT4G08150.1	21798944
AT5G38420.1	HORVU4Hr1G009730.1	AT4G08150.1	21798944
AT5G38420.1	HORVU5Hr1G098570.6	AT4G08150.1	21798944
AT5G38420.1	HORVU5Hr1G025740.13	AT5G11980.1	21798944
AT5G38430.1	HORVU7Hr1G051710.1	AT2G39930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G010690.1	Barley	plastid	92.11	100.0
HORVU2Hr1G010630.1	Barley	plastid	92.11	100.0
TraesCS2D01G065300.1	Wheat	plastid	90.0	98.28
TraesCS2B01G079200.1	Wheat	plastid	90.0	97.71
TraesCS2B01G079300.1	Wheat	plastid	89.47	97.7
TraesCS2A01G066700.1	Wheat	plastid	89.47	97.7
TraesCS2A01G066800.1	Wheat	plastid	89.47	97.14
TraesCS2D01G065200.1	Wheat	plastid	89.47	97.14
TraesCS2B01G079100.1	Wheat	plastid	88.95	97.13
TraesCS2D01G065100.2	Wheat	plastid	88.42	96.55
HORVU5Hr1G051010.2	Barley	plastid	86.84	94.29
HORVU5Hr1G038630.1	Barley	plastid	86.84	94.29
HORVU5Hr1G033540.2	Barley	plastid	86.32	93.71
HORVU1Hr1G035720.2	Barley	plastid	85.79	92.61
TraesCS2A01G066900.1	Wheat	plastid	91.58	90.62
TraesCS2B01G078900.2	Wheat	plastid	85.26	87.57
Os12t0291400-01	Rice	plastid	77.89	84.57
Os12t0292400-01	Rice	extracellular	75.79	82.29
Os12t0274700-01	Rice	plastid	75.79	82.29
Os12t0291100-01	Rice	plastid	75.79	82.29
GSMUA_Achr8P18400_001	Banana	cytosol	10.53	76.92
Zm00001d052595_P001	Maize	plastid	67.89	75.88
EES09292	Sorghum	plastid	67.37	75.74
Zm00001d004894_P001	Maize	plastid	67.37	75.29
GSMUA_Achr10P...	Banana	plasma membrane	61.05	73.42
GSMUA_Achr6P09710_001	Banana	plastid	60.53	72.78
GSMUA_Achr2P22730_001	Banana	unclear	58.95	70.89
PGSC0003DMT400067905	Potato	plastid	58.42	69.81
HORVU5Hr1G050990.4	Barley	plastid	70.53	69.79
PGSC0003DMT400032975	Potato	mitochondrion, plastid	62.11	65.56
Bra028181.1-P	Field mustard	plastid	54.21	63.58
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	59.47	62.43
PGSC0003DMT400062138	Potato	cytosol, plastid	59.47	62.43
AT1G67090.1	Thale cress	plastid	58.95	62.22
Solyc02g085950.2.1	Tomato	extracellular	58.95	62.22
AT5G38420.1	Thale cress	plastid	58.95	61.88
Solyc02g063150.2.1	Tomato	nucleus, plastid	58.95	61.88
Solyc03g034220.2.1	Tomato	plastid	58.42	61.67
KRG93867	Soybean	plastid	57.37	61.24
KRG93871	Soybean	plastid	57.37	61.24
KRH18247	Soybean	nucleus, plastid	57.37	61.24
AT5G38430.1	Thale cress	plastid	57.89	60.77
AT5G38410.3	Thale cress	plastid	59.47	60.75
Os12t0291200-00	Rice	plastid	30.53	60.42
CDY52468	Canola	plastid	57.37	60.22
Bra028174.1-P	Field mustard	plastid	57.37	60.22
CDY01665	Canola	plastid	57.37	60.22
CDY71122	Canola	plastid	57.37	60.22
CDY67657	Canola	plastid	56.84	59.67
CDY01671	Canola	plastid	56.84	59.67
Bra025431.1-P	Field mustard	plastid	56.84	59.67
CDX74525	Canola	plastid	56.84	59.67
CDX74532	Canola	plastid	56.84	59.67
CDX67402	Canola	plastid	56.32	59.12
CDY42338	Canola	plastid	56.32	59.12
Bra034029.1-P	Field mustard	plastid	56.32	59.12
Bra034027.1-P	Field mustard	plastid	56.32	59.12
CDY12613	Canola	plastid	56.32	59.12
VIT_17s0000g03690.t01	Wine grape	plastid	55.79	58.89
Bra028406.1-P	Field mustard	plastid	55.79	58.56
CDY12616	Canola	plastid	54.74	57.46
Bra034024.1-P	Field mustard	plastid	54.74	57.46
CDX99682	Canola	plastid	56.84	57.14
CDY42337	Canola	plastid	54.21	56.91
CDY12612	Canola	cytosol	35.79	56.2
CDY42341	Canola	plastid	53.16	54.3
HORVU7Hr1G048050.2	Barley	plastid	24.74	53.41
KRG93872	Soybean	plastid	37.37	52.59
KRH46925	Soybean	plastid	24.21	51.11
KRG93873	Soybean	plastid	27.37	49.52
KRH01757	Soybean	plastid	37.89	48.0
KRG99965	Soybean	plastid	30.53	44.27
KRG99964	Soybean	plastid	22.63	43.0
KRH15458	Soybean	plastid	30.0	35.85

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	Gene3D:3.30.190.10	UniProt:A0A287H208	EMBL:AK354803
EMBL:AK355912	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009853	GO:GO:0009987	GO:GO:0015977	GO:GO:0015979	GO:GO:0016491	GO:GO:0016829
GO:GO:0016984	GO:GO:0055114	EnsemblPlantsGene:HORVU2Hr1G010670	EnsemblPlants:HORVU2Hr1G010670.1	InterPro:IPR036385	PFAM:PF00101
PFAM:PF12338	PRINTS:PR00152	PANTHER:PTHR31262	PANTHER:PTHR31262:SF0	InterPro:RuBisCO_sc	InterPro:RuBisCO_sc_dom
InterPro:RuBisCO_ssu_N	InterPro:RuBisCO_ssu_sf	SMART:SM00961	SUPFAM:SSF55239	UniParc:UPI000B468DCD	:

Description

Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A287H208]

Coordinates

chrchr2H:+:20509006..20510542

Molecular Weight (calculated)

20968.3 Da

IEP (calculated)

9.194

GRAVY (calculated)

-0.132

Length

190 amino acids

Sequence
(BLAST)

001: AKLAIGSPPS NLRTTMAPAV MASSATTVAP FQGLKSTAGL PVSRRSGSAG LSSVSNGGRI RCMQVWPIEG IKKFETLSYL PPLSTEALLK QVDYLIRSKW
101: VPCLEFSKVG FVFREHNSSP GYYDGRYWTM WKLPMFGCTD ATQVLNEVEE VKKEYPDAYV RIIGFDNLRQ VQCVSFIAFR PPGCEESGKA

Best Arabidopsis Sequence Match ( AT5G38410.3 )
(BLAST)

001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS AAFPVTRKTN KDITSIASNG GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE
101: LEVINTKHGF VYREHGNTPG YYDGRYWTMW KLPLFGCTDS AQVLKEVEEC KKEYPGAFIR IIGFDNTRQV QCISFIAYKP PSFTEA

Arabidopsis Description

Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:B3H5S2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.