Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G065200.1 | Wheat | plastid | 99.43 | 99.43 |
| TraesCS2A01G066800.1 | Wheat | plastid | 99.43 | 99.43 |
| HORVU2Hr1G010690.1 | Barley | plastid | 97.71 | 97.71 |
| TraesCS2B01G079400.1 | Wheat | plastid | 97.71 | 97.71 |
| HORVU2Hr1G010630.1 | Barley | plastid | 97.71 | 97.71 |
| TraesCS2B01G079300.1 | Wheat | plastid | 96.57 | 97.13 |
| TraesCS2B01G079100.1 | Wheat | plastid | 96.0 | 96.55 |
| TraesCS5B01G162800.1 | Wheat | plastid | 94.29 | 94.29 |
| TraesCS5B01G162600.1 | Wheat | plastid | 94.29 | 94.29 |
| HORVU2Hr1G010670.1 | Barley | plastid | 97.71 | 90.0 |
| TraesCS2B01G079500.1 | Wheat | plastid | 97.14 | 88.08 |
| TraesCS2B01G078900.2 | Wheat | plastid | 92.0 | 87.03 |
| Os12t0291400-01 | Rice | plastid | 85.14 | 85.14 |
| Os12t0291100-01 | Rice | plastid | 82.86 | 82.86 |
| Os12t0292400-01 | Rice | extracellular | 82.86 | 82.86 |
| Os12t0274700-01 | Rice | plastid | 80.57 | 80.57 |
| Zm00001d052595_P001 | Maize | plastid | 74.86 | 77.06 |
| GSMUA_Achr8P18400_001 | Banana | cytosol | 11.43 | 76.92 |
| Zm00001d004894_P001 | Maize | plastid | 74.29 | 76.47 |
| EES09292 | Sorghum | plastid | 73.14 | 75.74 |
| GSMUA_Achr10P... | Banana | plasma membrane | 65.71 | 72.78 |
| GSMUA_Achr6P09710_001 | Banana | plastid | 65.14 | 72.15 |
| GSMUA_Achr2P22730_001 | Banana | unclear | 63.43 | 70.25 |
| PGSC0003DMT400067905 | Potato | plastid | 62.86 | 69.18 |
| PGSC0003DMT400032975 | Potato | mitochondrion, plastid | 66.86 | 65.0 |
| Bra028181.1-P | Field mustard | plastid | 58.29 | 62.96 |
| PGSC0003DMT400050381 | Potato | cytosol, extracellular, plastid | 64.0 | 61.88 |
| PGSC0003DMT400062138 | Potato | cytosol, plastid | 64.0 | 61.88 |
| Solyc02g085950.2.1 | Tomato | extracellular | 63.43 | 61.67 |
| AT1G67090.1 | Thale cress | plastid | 63.43 | 61.67 |
| Solyc02g063150.2.1 | Tomato | nucleus, plastid | 63.43 | 61.33 |
| AT5G38420.1 | Thale cress | plastid | 63.43 | 61.33 |
| Solyc03g034220.2.1 | Tomato | plastid | 62.86 | 61.11 |
| KRH18247 | Soybean | nucleus, plastid | 61.71 | 60.67 |
| KRG93867 | Soybean | plastid | 61.71 | 60.67 |
| KRG93871 | Soybean | plastid | 61.71 | 60.67 |
| Os12t0291200-00 | Rice | plastid | 33.14 | 60.42 |
| AT5G38430.1 | Thale cress | plastid | 62.29 | 60.22 |
| CDY52468 | Canola | plastid | 62.29 | 60.22 |
| AT5G38410.3 | Thale cress | plastid | 64.0 | 60.22 |
| CDY71122 | Canola | plastid | 61.71 | 59.67 |
| Bra028174.1-P | Field mustard | plastid | 61.71 | 59.67 |
| Bra025431.1-P | Field mustard | plastid | 61.71 | 59.67 |
| CDY01665 | Canola | plastid | 61.71 | 59.67 |
| CDY67657 | Canola | plastid | 61.14 | 59.12 |
| CDX74525 | Canola | plastid | 61.14 | 59.12 |
| CDX74532 | Canola | plastid | 61.14 | 59.12 |
| CDY01671 | Canola | plastid | 61.14 | 59.12 |
| Bra034027.1-P | Field mustard | plastid | 60.57 | 58.56 |
| Bra034029.1-P | Field mustard | plastid | 60.57 | 58.56 |
| CDX67402 | Canola | plastid | 60.57 | 58.56 |
| CDY12613 | Canola | plastid | 60.57 | 58.56 |
| CDY42338 | Canola | plastid | 60.57 | 58.56 |
| VIT_17s0000g03690.t01 | Wine grape | plastid | 60.0 | 58.33 |
| Bra028406.1-P | Field mustard | plastid | 60.0 | 58.01 |
| CDX99682 | Canola | plastid | 61.71 | 57.14 |
| CDY12616 | Canola | plastid | 58.86 | 56.91 |
| Bra034024.1-P | Field mustard | plastid | 58.86 | 56.91 |
| CDY42337 | Canola | plastid | 58.29 | 56.35 |
| CDY12612 | Canola | cytosol | 38.29 | 55.37 |
| CDY42341 | Canola | plastid | 57.14 | 53.76 |
| KRG93872 | Soybean | plastid | 40.0 | 51.85 |
| KRH46925 | Soybean | plastid | 26.29 | 51.11 |
| KRG93873 | Soybean | plastid | 29.71 | 49.52 |
| KRH01757 | Soybean | plastid | 40.57 | 47.33 |
| KRG99965 | Soybean | plastid | 33.14 | 44.27 |
| KRG99964 | Soybean | plastid | 24.57 | 43.0 |
| KRH15458 | Soybean | plastid | 32.57 | 35.85 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G079200.1 | EnsemblPlantsGene:TraesCS2B01G079200 | Gene3D:3.30.190.10 | InterPro:IPR036385 | InterPro:RuBisCO_sc | InterPro:RuBisCO_sc_dom |
| InterPro:RuBisCO_ssu_N | InterPro:RuBisCO_ssu_sf | KEGG:00630+4.1.1.39 | KEGG:00710+4.1.1.39 | PANTHER:PTHR31262 | PANTHER:PTHR31262:SF0 |
| PFAM:PF00101 | PFAM:PF12338 | PRINTS:PR00152 | SEG:seg | SMART:SM00961 | SUPFAM:SSF55239 |
| TIGR:cd03527 | MapMan:1.2.1.1.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:44285395..44286966
Molecular Weight (calculated)
19492.5 Da
IEP (calculated)
8.709
GRAVY (calculated)
-0.146
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPTVMASSA TSVAPFQGLK STAGLPVSRR SSSAGLSSVS NGGRIRCMQV WPIEGIKKFE TLSYLPPLST EALLKQVDYL IRSKWVPCLE FSKVGFVFRE
101: HNSSPGYYDG RYWTMWKLPM FGCTDATQVL NEVEEVKKEY PDAYVRVIGF DNLRQVQCVS FIAFRPPGCE ESGKA
101: HNSSPGYYDG RYWTMWKLPM FGCTDATQVL NEVEEVKKEY PDAYVRVIGF DNLRQVQCVS FIAFRPPGCE ESGKA
001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
Arabidopsis Description
RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.