CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93871	Soybean	plastid	100.0	100.0
KRH18247	Soybean	nucleus, plastid	99.44	99.44
KRG93872	Soybean	plastid	64.04	84.44
KRH46925	Soybean	plastid	42.13	83.33
PGSC0003DMT400067905	Potato	plastid	71.91	80.5
PGSC0003DMT400062138	Potato	cytosol, plastid	79.78	78.45
PGSC0003DMT400032975	Potato	mitochondrion, plastid	79.21	78.33
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	78.65	77.35
Solyc03g034220.2.1	Tomato	plastid	78.09	77.22
Solyc02g085950.2.1	Tomato	extracellular	77.53	76.67
Solyc02g063150.2.1	Tomato	nucleus, plastid	76.97	75.69
KRG93873	Soybean	plastid	43.82	74.29
GSMUA_Achr2P22730_001	Banana	unclear	65.17	73.42
GSMUA_Achr6P09710_001	Banana	plastid	65.17	73.42
GSMUA_Achr8P18400_001	Banana	cytosol	10.67	73.08
GSMUA_Achr10P...	Banana	plasma membrane	64.61	72.78
Os12t0291100-01	Rice	plastid	66.85	68.0
Os12t0274700-01	Rice	plastid	66.85	68.0
Os12t0292400-01	Rice	extracellular	66.29	67.43
Os12t0291400-01	Rice	plastid	66.29	67.43
KRG99964	Soybean	plastid	37.64	67.0
KRH01757	Soybean	plastid	56.18	66.67
Zm00001d004894_P001	Maize	plastid	63.48	66.47
KRG99965	Soybean	plastid	47.19	64.12
Zm00001d052595_P001	Maize	plastid	61.24	64.12
EES09292	Sorghum	plastid	60.67	63.91
HORVU1Hr1G035720.2	Barley	plastid	61.8	62.5
HORVU5Hr1G051010.2	Barley	plastid	61.24	62.29
HORVU5Hr1G038630.1	Barley	plastid	61.24	62.29
HORVU5Hr1G033540.2	Barley	plastid	61.24	62.29
HORVU2Hr1G010690.1	Barley	plastid	61.24	62.29
HORVU2Hr1G010630.1	Barley	plastid	61.24	62.29
TraesCS2B01G079300.1	Wheat	plastid	60.67	62.07
TraesCS2D01G065300.1	Wheat	plastid	60.67	62.07
TraesCS2A01G066700.1	Wheat	plastid	60.67	62.07
TraesCS2D01G065500.1	Wheat	plastid	57.3	61.82
TraesCS5B01G162600.1	Wheat	plastid	60.67	61.71
TraesCS5B01G162800.1	Wheat	plastid	60.67	61.71
TraesCS5A01G165700.1	Wheat	plastid	60.67	61.71
TraesCS5A01G165400.2	Wheat	plastid	60.67	61.71
TraesCS2D01G065600.1	Wheat	plastid	60.67	61.71
TraesCS2D01G065400.1	Wheat	plastid	60.67	61.71
TraesCS5D01G169600.2	Wheat	plastid	60.67	61.71
TraesCS2D01G065200.1	Wheat	plastid	60.67	61.71
TraesCS2B01G079400.1	Wheat	plastid	60.67	61.71
TraesCS2A01G067300.1	Wheat	plastid	60.67	61.71
TraesCS2B01G079200.1	Wheat	plastid	60.67	61.71
TraesCS2A01G066800.1	Wheat	plastid	60.67	61.71
TraesCS5D01G169900.2	Wheat	plastid	60.67	61.71
TraesCS2B01G079100.1	Wheat	plastid	60.11	61.49
TraesCS2A01G067200.1	Wheat	plastid	60.11	61.14
TraesCS2A01G067100.1	Wheat	plastid	60.11	61.14
TraesCS2D01G065100.2	Wheat	plastid	59.55	60.92
TraesCS2A01G067000.1	Wheat	plastid	59.55	60.57
HORVU2Hr1G010670.1	Barley	plastid	61.24	57.37
TraesCS2B01G078900.2	Wheat	plastid	59.55	57.3
TraesCS2A01G066900.1	Wheat	plastid	60.67	56.25
TraesCS2B01G079500.1	Wheat	plastid	60.67	55.96
KRH15458	Soybean	plastid	46.63	52.2
Os12t0291200-00	Rice	plastid	26.97	50.0
KRH19034	Soybean	plastid	48.31	50.0
HORVU5Hr1G050990.4	Barley	plastid	52.25	48.44
HORVU7Hr1G048050.2	Barley	plastid	18.54	37.5

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	EntrezGene:100794277	Gene3D:3.30.190.10	EntrezGene:547605
EMBL:ACUP02011637	EMBL:AF303939	EnsemblPlantsGene:GLYMA_19G046600	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009853	GO:GO:0009987	GO:GO:0015977	GO:GO:0015979
GO:GO:0016491	GO:GO:0016829	GO:GO:0016984	GO:GO:0055114	InterPro:IPR036385	EnsemblPlants:KRG93867
ProteinID:KRG93867	ProteinID:KRG93867.1	ProteinID:KRG93871.1	PFAM:PF00101	PFAM:PF12338	PRINTS:PR00152
PANTHER:PTHR31262	PANTHER:PTHR31262:SF0	MetaCyc:PWY-5532	MetaCyc:PWY-5723	UniProt:Q39832	InterPro:RuBisCO_sc
InterPro:RuBisCO_sc_dom	InterPro:RuBisCO_ssu_N	InterPro:RuBisCO_ssu_sf	SMART:SM00961	SUPFAM:SSF55239	EMBL:U39567
UniParc:UPI000009F05E	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:7189031..7190508

Molecular Weight (calculated)

20006.1 Da

IEP (calculated)

8.865

GRAVY (calculated)

-0.240

Length

178 amino acids

Sequence
(BLAST)

001: MASSMISSPA VTTVNRAGAG MVAPFTGLKS MAGFPTRKTN NDITSIASNG GRVQCMQVWP PVGKKKFETL SYLPDLDDAQ LAKEVEYLLR KGWIPCLEFE
101: LEHGFVYREH NRSPGYYDGR YWTMWKLPMF GCTDASQVLK ELQEAKTAYP NGFIRIIGFD NVRQVQCISF IAYKPPGF

Best Arabidopsis Sequence Match ( AT5G38410.1 )
(BLAST)

001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS AAFPVTRKTN KDITSIASNG GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTE A

Arabidopsis Description

Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:B3H5S2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.