Factsheet for Solyc02g085950.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 9
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
extracellular: 22892874
nucleus: 25464976
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g087650.2.1
Solyc02g086840.2.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc03g118540.2.1
Solyc04g040220.2.1
Solyc04g077210.2.1
Solyc05g018160.1.1
Solyc06g068930.1.1
Solyc06g072990.1.1
Solyc06g075780.1.1
Solyc07g014590.2.1
Solyc07g047770.2.1
Solyc09g097830.2.1
Solyc10g079460.1.1
Solyc10g079750.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67090.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT1G67090.1	Solyc11g073060.1.1	AT3G46090.1	17259181
AT1G67090.1	Solyc07g047770.2.1	AT5G35750.1	18642946
AT5G38420.1	Solyc04g040220.2.1	AT2G41370.1	21798944
AT5G38420.1	Solyc05g018160.1.1	AT2G41370.1	21798944
AT5G38420.1	Solyc10g079460.1.1	AT2G41370.1	21798944
AT5G38420.1	Solyc10g079750.1.1	AT2G41370.1	21798944
AT5G38420.1	Solyc09g097830.2.1	AT3G04240.1	21798944
AT5G38420.1	Solyc03g118540.2.1	AT3G17860.1	21798944
AT5G38420.1	Solyc06g068930.1.1	AT3G17860.1	21798944
AT5G38420.1	Solyc02g086840.2.1	AT3G27960.1	21798944
AT5G38420.1	Solyc04g077210.2.1	AT4G08150.1	21798944
AT5G38420.1	Solyc01g087650.2.1	AT5G11980.1	21798944
AT5G38420.1	Solyc03g096760.1.1	AT5G24660.1	21798944
AT5G38420.1	Solyc03g096770.1.1	AT5G24660.1	21798944
AT5G38420.1	Solyc03g096780.1.1	AT5G24660.1	21798944
AT5G38420.1	Solyc06g072990.1.1	AT5G24660.1	21798944
AT5G38430.1	Solyc07g014590.2.1	AT2G39930.1	21798944
AT5G38430.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT5G38430.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067905	Potato	plastid	84.44	95.6
PGSC0003DMT400032975	Potato	mitochondrion, plastid	95.56	95.56
Solyc03g034220.2.1	Tomato	plastid	94.44	94.44
Solyc02g063150.2.1	Tomato	nucleus, plastid	92.22	91.71
KRH18247	Soybean	nucleus, plastid	77.22	78.09
KRG93871	Soybean	plastid	76.67	77.53
KRG93867	Soybean	plastid	76.67	77.53
CDY52468	Canola	plastid	73.89	73.48
AT5G38430.1	Thale cress	plastid	73.89	73.48
AT5G38420.1	Thale cress	plastid	73.89	73.48
GSMUA_Achr2P22730_001	Banana	unclear	64.44	73.42
KRH46925	Soybean	plastid	36.67	73.33
Bra025431.1-P	Field mustard	plastid	73.33	72.93
GSMUA_Achr6P09710_001	Banana	plastid	63.89	72.78
Bra028174.1-P	Field mustard	plastid	72.78	72.38
CDY71122	Canola	plastid	72.78	72.38
AT5G38410.3	Thale cress	plastid	74.44	72.04
CDY01665	Canola	plastid	72.22	71.82
Bra028181.1-P	Field mustard	plastid	64.44	71.6
CDX67402	Canola	plastid	71.67	71.27
CDY01671	Canola	plastid	71.67	71.27
CDX74532	Canola	plastid	71.67	71.27
GSMUA_Achr10P...	Banana	plasma membrane	62.22	70.89
Bra028406.1-P	Field mustard	plastid	71.11	70.72
CDY67657	Canola	plastid	71.11	70.72
CDX74525	Canola	plastid	71.11	70.72
AT1G67090.1	Thale cress	plastid	70.56	70.56
CDX99682	Canola	plastid	73.33	69.84
Os12t0291400-01	Rice	plastid	67.78	69.71
Os12t0274700-01	Rice	plastid	67.22	69.14
Os12t0291100-01	Rice	plastid	67.22	69.14
Os12t0292400-01	Rice	extracellular	66.67	68.57
VIT_17s0000g03690.t01	Wine grape	plastid	68.33	68.33
KRG93872	Soybean	plastid	50.56	67.41
CDY12613	Canola	plastid	66.67	66.3
Bra034027.1-P	Field mustard	plastid	66.67	66.3
Bra034029.1-P	Field mustard	plastid	66.67	66.3
Zm00001d004894_P001	Maize	plastid	61.67	65.29
Bra034024.1-P	Field mustard	plastid	65.56	65.19
CDY42338	Canola	plastid	65.0	64.64
CDY12616	Canola	plastid	65.0	64.64
EES09292	Sorghum	plastid	60.56	64.5
HORVU1Hr1G035720.2	Barley	plastid	62.78	64.2
Zm00001d052595_P001	Maize	plastid	60.56	64.12
HORVU5Hr1G051010.2	Barley	plastid	62.22	64.0
HORVU5Hr1G038630.1	Barley	plastid	62.22	64.0
HORVU2Hr1G010690.1	Barley	plastid	62.22	64.0
HORVU2Hr1G010630.1	Barley	plastid	62.22	64.0
TraesCS2D01G065300.1	Wheat	plastid	61.67	63.79
TraesCS2A01G066700.1	Wheat	plastid	61.67	63.79
TraesCS2D01G065500.1	Wheat	plastid	58.33	63.64
CDY42337	Canola	plastid	63.89	63.54
TraesCS5B01G162600.1	Wheat	plastid	61.67	63.43
TraesCS5A01G165400.2	Wheat	plastid	61.67	63.43
TraesCS2D01G065600.1	Wheat	plastid	61.67	63.43
TraesCS2D01G065200.1	Wheat	plastid	61.67	63.43
TraesCS5A01G165700.1	Wheat	plastid	61.67	63.43
TraesCS2B01G079400.1	Wheat	plastid	61.67	63.43
TraesCS2B01G079200.1	Wheat	plastid	61.67	63.43
TraesCS2A01G067300.1	Wheat	plastid	61.67	63.43
TraesCS5B01G162800.1	Wheat	plastid	61.67	63.43
TraesCS5D01G169900.2	Wheat	plastid	61.67	63.43
TraesCS5D01G169600.2	Wheat	plastid	61.67	63.43
HORVU5Hr1G033540.2	Barley	plastid	61.67	63.43
TraesCS2B01G079300.1	Wheat	plastid	61.11	63.22
TraesCS2B01G079100.1	Wheat	plastid	61.11	63.22
TraesCS2A01G066800.1	Wheat	plastid	61.11	62.86
TraesCS2D01G065400.1	Wheat	plastid	61.11	62.86
TraesCS2A01G067200.1	Wheat	plastid	61.11	62.86
TraesCS2A01G067100.1	Wheat	plastid	61.11	62.86
KRH01757	Soybean	plastid	52.22	62.67
TraesCS2D01G065100.2	Wheat	plastid	60.56	62.64
KRG93873	Soybean	plastid	36.11	61.9
TraesCS2A01G067000.1	Wheat	plastid	60.0	61.71
GSMUA_Achr8P18400_001	Banana	cytosol	8.89	61.54
CDY42341	Canola	plastid	63.33	61.29
KRG99964	Soybean	plastid	32.78	59.0
HORVU2Hr1G010670.1	Barley	plastid	62.22	58.95
TraesCS2B01G078900.2	Wheat	plastid	60.56	58.92
KRG99965	Soybean	plastid	42.78	58.78
TraesCS2A01G066900.1	Wheat	plastid	61.67	57.81
TraesCS2B01G079500.1	Wheat	plastid	61.67	57.51
CDY12612	Canola	cytosol	38.33	57.02
Solyc07g017950.2.1	Tomato	plastid	48.89	52.07
Os12t0291200-00	Rice	plastid	26.11	48.96
HORVU5Hr1G050990.4	Barley	plastid	51.67	48.44
KRH15458	Soybean	plastid	41.67	47.17
HORVU7Hr1G048050.2	Barley	plastid	20.0	40.91

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	Gene3D:3.30.190.10	ProteinID:BAA01888.1	ProteinID:CAA29403.1
ProteinID:CAA46871.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009853	GO:GO:0009987	GO:GO:0015977	GO:GO:0015979
GO:GO:0016491	GO:GO:0016829	GO:GO:0016984	GO:GO:0019253	GO:GO:0055114	InterPro:IPR036385
UniProt:P05349	PFAM:PF00101	PFAM:PF12338	PRINTS:PR00152	PANTHER:PTHR31262	PANTHER:PTHR31262:SF0
InterPro:RuBisCO_sc	InterPro:RuBisCO_sc_dom	InterPro:RuBisCO_ssu_N	InterPro:RuBisCO_ssu_sf	SMART:SM00961	SUPFAM:SSF55239
EnsemblPlantsGene:Solyc02g085950.2	EnsemblPlants:Solyc02g085950.2.1	UniParc:UPI00001333CC	SEG:seg	:	:

Description

RBCS-3BRibulose bisphosphate carboxylase small chain 3B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P05349]

Coordinates

chr2:+:48715436..48716462

Molecular Weight (calculated)

20214.1 Da

IEP (calculated)

7.283

GRAVY (calculated)

-0.228

Length

180 amino acids

Sequence
(BLAST)

001: MASSIVSSAA VATRGNGAQA SMVAPFTGLK STASFPVSRK QNLDITSIAS NGGRVSCMQV WPPINMKKYE TLSYLPDLSD EQLLSEIEYL LKNGWVPCLE
101: FETEHGFVYR ENHKSPGYYD GRYWTMWKLP MFGCTDATQV LAEVQEAKKA YPQAWVRIIG FDNVRQVQCI SFIAYKPEGY

Best Arabidopsis Sequence Match ( AT5G38410.1 )
(BLAST)

001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS AAFPVTRKTN KDITSIASNG GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTE A

Arabidopsis Description

Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:B3H5S2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.