Factsheet for Solyc05g018160.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g038790.1.1
Solyc02g084080.1.1
Solyc02g084110.1.1
Solyc02g084160.1.1
Solyc02g084200.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41370.1	Solyc02g038790.1.1	AT3G51180.1	21798944
AT2G41370.1	Solyc02g084080.1.1	AT3G51180.1	21798944
AT2G41370.1	Solyc02g084110.1.1	AT3G51180.1	21798944
AT2G41370.1	Solyc02g084160.1.1	AT3G51180.1	21798944
AT2G41370.1	Solyc02g084200.1.1	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79940	Canola	cytosol	60.0	53.0
Bra004617.1-P	Field mustard	cytosol	59.64	52.68
CDX76040	Canola	cytosol	50.71	48.8
Bra014645.1-P	Field mustard	cytosol	50.36	48.45
CDY35774	Canola	cytosol	49.64	47.77
Os01t0948900-01	Rice	cytosol	55.0	45.7
CDY33841	Canola	cytosol	14.64	41.41
Solyc10g079750.1.1	Tomato	cytosol	71.43	40.98
PGSC0003DMT400076710	Potato	cytosol	71.07	40.86
Os12t0138500-01	Rice	cytosol	42.86	36.92
GSMUA_Achr5P08160_001	Banana	cytosol	55.71	36.53
GSMUA_Achr3P08710_001	Banana	cytosol	55.36	36.38
GSMUA_Achr11P...	Banana	cytosol	56.07	36.34
GSMUA_AchrUn_...	Banana	cytosol	53.21	35.56
Solyc04g040220.2.1	Tomato	cytosol	58.57	35.19
CDY23854	Canola	cytosol	60.36	35.14
Solyc10g079460.1.1	Tomato	cytosol	61.07	34.62
VIT_08s0007g05740.t01	Wine grape	cytosol	60.36	34.49
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	59.64	34.29
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	59.64	34.29
AT2G41370.1	Thale cress	cytosol	60.0	34.22
Bra016938.1-P	Field mustard	cytosol	59.29	34.09
GSMUA_Achr8P22070_001	Banana	cytosol	50.36	33.98
KRH66789	Soybean	cytosol	58.21	33.47
AT3G57130.1	Thale cress	cytosol	55.36	33.19
KRH72058	Soybean	cytosol	56.07	32.98
Bra003268.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	53.57	32.47
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	53.21	32.25
GSMUA_Achr5P16220_001	Banana	cytosol	50.36	31.97
Zm00001d011878_P001	Maize	cytosol	55.36	31.63
CDY06130	Canola	cytosol	51.43	31.17
Bra007306.1-P	Field mustard	cytosol	51.43	31.17
CDX72067	Canola	cytosol	51.43	31.1
OQU88196	Sorghum	cytosol	55.0	30.37
GSMUA_AchrUn_...	Banana	cytosol	48.57	30.36
CDY30971	Canola	cytosol	49.29	30.33
Zm00001d042111_P001	Maize	cytosol	53.93	29.72
HORVU3Hr1G106880.5	Barley	cytosol	53.21	29.04
TraesCS3A01G489000.1	Wheat	cytosol	53.21	28.99
TraesCS3B01G537400.1	Wheat	cytosol	53.21	28.99
TraesCS3D01G484100.1	Wheat	cytosol	52.86	28.96
Zm00001d052468_P002	Maize	cytosol	42.14	25.05
Zm00001d023246_P001	Maize	cytosol	42.5	25.05
EES16520	Sorghum	cytosol	42.86	25.0
EES09234	Sorghum	cytosol	42.86	24.79
Zm00001d004966_P001	Maize	cytosol	41.07	24.31
Os11t0141900-00	Rice	cytosol	42.86	24.29
TraesCS5A01G134700.2	Wheat	cytosol	42.14	23.94
TraesCS5B01G133700.1	Wheat	cytosol	42.14	23.94
TraesCS5D01G139600.1	Wheat	cytosol	42.14	23.94
Solyc07g044980.2.1	Tomato	nucleus	21.79	10.65
Solyc07g040690.2.1	Tomato	cytosol	21.43	10.42
Solyc02g069310.2.1	Tomato	cytosol, plastid	21.43	10.33

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009864
GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787
GO:GO:0043161	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:K4BZ71	InterPro:NPR_central_dom
PFAM:PF11900	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF116	SMART:SM00248	SUPFAM:SSF48403
EnsemblPlantsGene:Solyc05g018160.1	EnsemblPlants:Solyc05g018160.1.1	UniParc:UPI00027671FA	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:+:20119847..20120831

Molecular Weight (calculated)

31065.5 Da

IEP (calculated)

6.398

GRAVY (calculated)

-0.164

Length

280 amino acids

Sequence
(BLAST)

001: MVEKISIEDV MKVLIASRKQ DMPQVLWTTC SHLVAKSGLP PEIVAKHLPI DVVAKIEEIC LKTSLVRKSL ISHHHQYHHQ HDLISLGGCE SVTRARCSQR
101: EPPGWSSWQT PLHIASEMLF PDMVVVLLDH HADPNDKTMD GITPLDILRA LNSDLLFKGV IPCLTHIEPN KLRLCLELVQ SAAMVISREE ENTNNDPSST
201: AISQPINNED HGSSTSNTTN VGGNNLNLDS RMVYLNLGSS TLIAQQIGCN RMTNDDIMII VTINKIHGGF DPSSMHHPYL

Best Arabidopsis Sequence Match ( AT2G41370.1 )
(BLAST)

001: MSNLEESLRS LSLDFLNLLI NGQAFSDVTF SVEGRLVHAH RCILAARSLF FRKFFCGTDS PQPVTGIDPT QHGSVPASPT RGSTAPAGII PVNSVGYEVF
101: LLLLQFLYSG QVSIVPQKHE PRPNCGERGC WHTHCSAAVD LALDTLAASR YFGVEQLALL TQKQLASMVE KASIEDVMKV LIASRKQDMH QLWTTCSHLV
201: AKSGLPPEIL AKHLPIDVVT KIEELRLKSS IARRSLMPHN HHHDLSVAQD LEDQKIRRMR RALDSSDVEL VKLMVMGEGL NLDESLALHY AVESCSREVV
301: KALLELGAAD VNYPAGPAGK TPLHIAAEMV SPDMVAVLLD HHADPNVRTV GGITPLDILR TLTSDFLFKG AVPGLTHIEP NKLRLCLELV QSAAMVISRE
401: EGNNSNNQNN DNNTGIYPHM NEEHNSGSSG GSNNNLDSRL VYLNLGAGTG QMGPGRDQGD DHNSQREGMS RHHHHHQDPS TMYHHHHQHH F

Arabidopsis Description

NPR5Regulatory protein NPR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.