Factsheet for Solyc02g084080.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g024070.2.1
Solyc02g069830.2.1
Solyc02g086840.2.1
Solyc03g096000.2.1
Solyc04g016400.2.1
Solyc05g052510.2.1
Solyc06g005800.2.1
Solyc06g051310.2.1
Solyc06g076430.2.1
Solyc10g079890.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51180.1	Solyc06g005800.2.1	AT2G29400.1	21798944
AT3G51180.1	Solyc06g076430.2.1	AT2G29400.1	21798944
AT3G51180.1	Solyc02g024070.2.1	AT2G34710.1	21798944
AT3G51180.1	Solyc02g069830.2.1	AT2G34710.1	21798944
AT3G51180.1	Solyc03g096000.2.1	AT3G08530.1	21798944
AT3G51180.1	Solyc05g052510.2.1	AT3G08530.1	21798944
AT3G51180.1	Solyc06g051310.2.1	AT3G08530.1	21798944
AT3G51180.1	Solyc02g086840.2.1	AT3G27960.1	21798944
AT3G51180.1	Solyc04g016400.2.1	AT5G04170.1	21798944
AT3G51180.1	Solyc10g079890.1.1	AT5G04170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g084160.1.1	Tomato	cytosol	33.87	26.42
Solyc02g038790.1.1	Tomato	cytosol	34.68	21.39
Solyc02g084110.1.1	Tomato	cytosol	22.58	18.42
Bra012068.1-P	Field mustard	cytosol	25.0	17.22
PGSC0003DMT400009146	Potato	nucleus	58.06	11.9
KRH76672	Soybean	nucleus	33.06	10.54
KRH28783	Soybean	nucleus	27.42	9.74
Solyc02g084200.1.1	Tomato	nucleus	45.16	9.43
CDY45225	Canola	cytosol, nucleus, plastid	30.65	9.29
Os04t0663200-01	Rice	cytosol	28.23	8.91
CDY67080	Canola	cytosol, nucleus, plastid	28.23	8.84
AT5G66270.1	Thale cress	cytosol	30.65	8.46
AT3G51180.1	Thale cress	nucleus	35.48	8.45
CDX73744	Canola	mitochondrion, nucleus	33.06	8.22
CDX77980	Canola	mitochondrion, nucleus, plastid	30.65	8.05
Bra036832.1-P	Field mustard	nucleus	30.65	7.66
KRH69800	Soybean	plastid	33.87	7.57
KRH28782	Soybean	cytosol, nucleus, plastid	29.84	7.51
EES13033	Sorghum	mitochondrion	26.61	7.33
Zm00001d001952_P001	Maize	mitochondrion	26.61	7.3
GSMUA_Achr1P19920_001	Banana	cytosol	25.81	7.17
TraesCS2B01G520300.1	Wheat	mitochondrion	29.84	6.92
KRH69802	Soybean	mitochondrion	31.45	6.85
HORVU2Hr1G109820.1	Barley	mitochondrion	29.03	6.82
Solyc12g089260.1.1	Tomato	nucleus	26.61	6.76
Zm00001d026536_P002	Maize	nucleus	25.81	6.69
TraesCS2D01G492400.1	Wheat	mitochondrion	29.84	6.68
TraesCS2A01G492200.1	Wheat	mitochondrion	29.84	6.67
GSMUA_Achr3P11230_001	Banana	cytosol	24.19	6.48
HORVU2Hr1G109740.2	Barley	plastid	29.03	5.83
VIT_04s0023g03180.t01	Wine grape	cytosol	29.03	5.06

Protein Annotations

EnsemblPlants:Solyc02g084080.1.1	EnsemblPlantsGene:Solyc02g084080.1	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	UniParc:UPI000276889B	UniProt:K4BAS4
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:47275743..47276208

Molecular Weight (calculated)

13570.5 Da

IEP (calculated)

8.477

GRAVY (calculated)

-0.116

Length

124 amino acids

Sequence
(BLAST)

001: MRVIPAVFPD RSAIPPNPYN VSDLEQGYDD SKTPIVRTIP IEESTHGLTV SIATTAAALA KSQEQGSLVD TNILVRLLLN LQEIPKQMKE YGMATKAATV
101: VSLNAAMSRQ VDLLVPCPRQ NRIR

Best Arabidopsis Sequence Match ( AT3G51180.1 )
(BLAST)

001: MNNMKRSKKP RVSWPPGPKL CQVKVFRTED SPANVASQPQ RHSYPSRKPR GPDLPPGFEG NHYAVKPNVS NIPRIKWKRP PPKFSVNDTW LVGCGGGSSE
101: WQNENLRISK VLEAIYPHRS AIPSRPSVSP AVEAECFDDS KTPAIRLTPI EDESESSSEE SSNSKVESGV TANKQGQLET KPLCSTQEQV SGLTGLAPDL
201: SLAASAALTA LMKTKEQGSL VDTELLIKFL SDPKLIKNLI TDTSGKSSET KNQPIVTNIN SATRPVPQPV SAVTASPMAR KPQPVIIPQE HSVAVSRSFT
301: NPERRVSPPK PVNGSISPPK PITGKPSSIP MPVHFHVGIA KEQPQPARFP SSSLPMNLNF HRPPNVFSEP KVIVNPQPQH QPYSAFRTSE MNYVQSSIGL
401: GRGPQTGFNS YPMNFSRADA IGSAKPVVQP MKGLDYFKNL IREHGTDNHE TNQYHSQTGI FNGRIDNNNK IHQQCIYFGT ANGCNMGDSC TYVHDRYRPN
501: FEAAAPRAKR MKFGRYERNG F

Arabidopsis Description

Zinc finger CCCH domain-containing protein 45 [Source:UniProtKB/Swiss-Prot;Acc:Q94C33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.