Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77980 | Canola | mitochondrion, nucleus, plastid | 56.62 | 62.5 |
| CDX73744 | Canola | mitochondrion, nucleus | 58.16 | 60.72 |
| Bra036832.1-P | Field mustard | nucleus | 54.32 | 57.06 |
| AT5G66270.1 | Thale cress | cytosol | 35.32 | 40.98 |
| Solyc02g084080.1.1 | Tomato | cytosol | 8.45 | 35.48 |
| Solyc02g038790.1.1 | Tomato | cytosol | 10.94 | 28.36 |
| KRH28782 | Soybean | cytosol, nucleus, plastid | 25.14 | 26.57 |
| AT1G19860.2 | Thale cress | nucleus | 20.73 | 26.02 |
| GSMUA_Achr1P19920_001 | Banana | cytosol | 21.5 | 25.11 |
| KRH76672 | Soybean | nucleus | 18.43 | 24.68 |
| EES13033 | Sorghum | mitochondrion | 21.31 | 24.67 |
| KRH69800 | Soybean | plastid | 25.91 | 24.32 |
| Zm00001d001952_P001 | Maize | mitochondrion | 20.73 | 23.89 |
| GSMUA_Achr3P11230_001 | Banana | cytosol | 21.11 | 23.76 |
| Solyc02g084160.1.1 | Tomato | cytosol | 7.1 | 23.27 |
| KRH69802 | Soybean | mitochondrion | 25.34 | 23.2 |
| TraesCS2B01G520300.1 | Wheat | mitochondrion | 23.8 | 23.18 |
| HORVU2Hr1G109820.1 | Barley | mitochondrion | 23.42 | 23.11 |
| KRH28783 | Soybean | nucleus | 15.16 | 22.64 |
| TraesCS2A01G492200.1 | Wheat | mitochondrion | 23.8 | 22.34 |
| TraesCS2D01G492400.1 | Wheat | mitochondrion | 23.61 | 22.2 |
| Zm00001d026536_P002 | Maize | nucleus | 19.96 | 21.76 |
| Os04t0663200-01 | Rice | cytosol | 14.97 | 19.85 |
| HORVU2Hr1G109740.2 | Barley | plastid | 23.42 | 19.74 |
| Solyc02g084110.1.1 | Tomato | cytosol | 5.76 | 19.74 |
| Solyc02g084200.1.1 | Tomato | nucleus | 21.11 | 18.52 |
| PGSC0003DMT400009146 | Potato | nucleus | 21.31 | 18.35 |
| VIT_04s0023g03180.t01 | Wine grape | cytosol | 23.8 | 17.42 |
| PGSC0003DMT400009142 | Potato | plasma membrane | 16.51 | 15.93 |
| PGSC0003DMT400092162 | Potato | nucleus | 16.7 | 15.51 |
Protein Annotations
| MapMan:15.5.16 | EntrezGene:824281 | ProteinID:AEE78760.1 | ArrayExpress:AT3G51180 | EnsemblPlantsGene:AT3G51180 | RefSeq:AT3G51180 |
| TAIR:AT3G51180 | RefSeq:AT3G51180-TAIR-G | EnsemblPlants:AT3G51180.1 | TAIR:AT3G51180.1 | EMBL:AY037185 | Unigene:At.863 |
| EMBL:BT000512 | ProteinID:CAB62640.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0046872 | InterPro:IPR000571 | RefSeq:NP_566947.1 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50103 | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF2 | UniProt:Q94C33 |
| UniParc:UPI00000AC610 | InterPro:Znf_CCCH | SEG:seg | : | : | : |
Description
Zinc finger CCCH domain-containing protein 45 [Source:UniProtKB/Swiss-Prot;Acc:Q94C33]
Coordinates
chr3:+:19013389..19016347
Molecular Weight (calculated)
57373.0 Da
IEP (calculated)
10.175
GRAVY (calculated)
-0.694
Length
521 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNMKRSKKP RVSWPPGPKL CQVKVFRTED SPANVASQPQ RHSYPSRKPR GPDLPPGFEG NHYAVKPNVS NIPRIKWKRP PPKFSVNDTW LVGCGGGSSE
101: WQNENLRISK VLEAIYPHRS AIPSRPSVSP AVEAECFDDS KTPAIRLTPI EDESESSSEE SSNSKVESGV TANKQGQLET KPLCSTQEQV SGLTGLAPDL
201: SLAASAALTA LMKTKEQGSL VDTELLIKFL SDPKLIKNLI TDTSGKSSET KNQPIVTNIN SATRPVPQPV SAVTASPMAR KPQPVIIPQE HSVAVSRSFT
301: NPERRVSPPK PVNGSISPPK PITGKPSSIP MPVHFHVGIA KEQPQPARFP SSSLPMNLNF HRPPNVFSEP KVIVNPQPQH QPYSAFRTSE MNYVQSSIGL
401: GRGPQTGFNS YPMNFSRADA IGSAKPVVQP MKGLDYFKNL IREHGTDNHE TNQYHSQTGI FNGRIDNNNK IHQQCIYFGT ANGCNMGDSC TYVHDRYRPN
501: FEAAAPRAKR MKFGRYERNG F
101: WQNENLRISK VLEAIYPHRS AIPSRPSVSP AVEAECFDDS KTPAIRLTPI EDESESSSEE SSNSKVESGV TANKQGQLET KPLCSTQEQV SGLTGLAPDL
201: SLAASAALTA LMKTKEQGSL VDTELLIKFL SDPKLIKNLI TDTSGKSSET KNQPIVTNIN SATRPVPQPV SAVTASPMAR KPQPVIIPQE HSVAVSRSFT
301: NPERRVSPPK PVNGSISPPK PITGKPSSIP MPVHFHVGIA KEQPQPARFP SSSLPMNLNF HRPPNVFSEP KVIVNPQPQH QPYSAFRTSE MNYVQSSIGL
401: GRGPQTGFNS YPMNFSRADA IGSAKPVVQP MKGLDYFKNL IREHGTDNHE TNQYHSQTGI FNGRIDNNNK IHQQCIYFGT ANGCNMGDSC TYVHDRYRPN
501: FEAAAPRAKR MKFGRYERNG F
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.