Factsheet for PGSC0003DMT400009142

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001405
PGSC0003DMT400030829
PGSC0003DMT400033117
PGSC0003DMT400053683
PGSC0003DMT400054421
PGSC0003DMT400076703
PGSC0003DMT400078199

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51180.1	PGSC0003DMT400053683	AT2G29400.1	21798944
AT3G51180.1	PGSC0003DMT400078199	AT2G29400.1	21798944
AT3G51180.1	PGSC0003DMT400030829	AT2G34710.1	21798944
AT3G51180.1	PGSC0003DMT400054421	AT2G34710.1	21798944
AT3G51180.1	PGSC0003DMT400001405	AT3G27960.1	21798944
AT3G51180.1	PGSC0003DMT400033117	AT5G04170.1	21798944
AT3G51180.1	PGSC0003DMT400076703	AT5G04170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g084200.1.1	Tomato	nucleus	79.81	72.56
PGSC0003DMT400009146	Potato	nucleus	42.59	38.02
Bra012068.1-P	Field mustard	cytosol	10.19	30.56
PGSC0003DMT400092162	Potato	nucleus	30.37	29.23
CDY67080	Canola	cytosol, nucleus, plastid	15.37	20.96
KRH76672	Soybean	nucleus	14.81	20.57
CDY45225	Canola	cytosol, nucleus, plastid	15.19	20.05
KRH28783	Soybean	nucleus	11.85	18.34
KRH28782	Soybean	cytosol, nucleus, plastid	16.11	17.65
KRH69800	Soybean	plastid	17.96	17.48
AT5G66270.1	Thale cress	cytosol	14.44	17.37
KRH69802	Soybean	mitochondrion	18.15	17.22
PGSC0003DMT400075650	Potato	nucleus	15.0	16.56
AT3G51180.1	Thale cress	nucleus	15.93	16.51
CDX77980	Canola	mitochondrion, nucleus, plastid	14.26	16.31
CDX73744	Canola	mitochondrion, nucleus	15.0	16.23
Bra036832.1-P	Field mustard	nucleus	14.63	15.93
GSMUA_Achr1P19920_001	Banana	cytosol	12.96	15.7
Os04t0663200-01	Rice	cytosol	11.11	15.27
Zm00001d001952_P001	Maize	mitochondrion	12.78	15.27
GSMUA_Achr3P11230_001	Banana	cytosol	12.78	14.9
EES13033	Sorghum	mitochondrion	12.22	14.67
VIT_04s0023g03180.t01	Wine grape	cytosol	18.52	14.04
TraesCS2B01G520300.1	Wheat	mitochondrion	13.7	13.83
TraesCS2A01G492200.1	Wheat	mitochondrion	14.07	13.69
Zm00001d026536_P002	Maize	nucleus	12.04	13.6
TraesCS2D01G492400.1	Wheat	mitochondrion	13.7	13.36
HORVU2Hr1G109820.1	Barley	mitochondrion	12.96	13.26
HORVU2Hr1G109740.2	Barley	plastid	13.52	11.81

Protein Annotations

EnsemblPlants:PGSC0003DMT400009142	EnsemblPlantsGene:PGSC0003DMG400003555	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	PGSC:PGSC0003DMG400003555	SEG:seg
UniParc:UPI0002965988	UniProt:M0ZVP1	MapMan:15.5.16	:	:	:

Description

Zinc finger (CCCH-type) family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003555]

Coordinates

chr2:-:39572810..39576123

Molecular Weight (calculated)

59284.8 Da

IEP (calculated)

8.525

GRAVY (calculated)

-0.517

Length

540 amino acids

Sequence
(BLAST)

001: MKVTNDLPLS CFWFLESFFL HQHLKFNLNE KWRVVAGEES KEAGDQEHRE KRVLEVVFPC RSAIPPNPCT SLDLDQNYDD NQTPAIRIIP IEEEADVEVP
101: SQTISSKSSD ACLPNSASSS FSLVTSQKLP ANEKLLPQSL STIQNPRKPS SNSPPSPKWP SNVQSTPYLS RCRNLKGSDQ TKVSPKPPTI PQYQPTFKNI
201: STQEQTEIYP DQSANQNYGP KCQRICENQN IPQLKSEVSG MPPAKHNPVT QNIPGFEGDL TVAIATAVAA LAKSQEQDSL IDTNLLVRLL LNPKEIPKLM
301: NDHGLATNAK TGAATIDSLV AAMSRPVDLP VPLPRTKPDK VIIKPINEYQ APHAGSGPIF GPKPMAKSVP LTMTKPETSV KSNLVNEQRA PPHVGTANIR
401: ESKSLAHPTS DLNLEKIKKL INKYGVPDNV GGKPLVNSEL VPSSCSKYDV VSPNVGHTSP FSSMTSPTPL HKDINYCKSL IKQHGEICES AVDDRLQNTN
501: PRGDAVMVPL VPSCMIYPDK RGLGGFWKLG ILRECRKVRT

Best Arabidopsis Sequence Match ( AT1G19860.2 )
(BLAST)

001: MLTSPCLLSL DCMFEITGPM VRLFISEDSP SQVGSESQDH LQAKSPLASH PSDDNLPPGF GGPFSANESQ IKLSDIPLIK WKCSVQILLD REWKVVAGDE
101: SKEVEAQNER ELRVLEAFYP GASSIPPNPS VPADVEDSHH DDQQTIVIPI LPVEDDDIAM DSASDFPTQS GVDVGTEPSI TDENTSTSST LPAGPDIMAA
201: LSAISNSKEQ GSMIDQDLLI KILSNPKLVE NLVANRGSAG SVSSNTSSLY SSSTHEANGV VTTAPISSNG QFYAQPPITH IPPMAYTPHA PQDQPNYGAP
301: PARDASYYKN LIQQHGGDRQ ETPPVQHLGY RYNLQPGGGP NPEMVNSSNN NQRPRDSKPK IMKACMYFNS ARGCRHGANC MYQHDATPYQ PRNLNNGNIN
401: TSDMQNAKRM RFDRD

Arabidopsis Description

Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.