Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 6
- plastid 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13033 | Sorghum | mitochondrion | 80.97 | 81.33 |
| Zm00001d026536_P002 | Maize | nucleus | 74.56 | 70.5 |
| Os04t0663200-01 | Rice | cytosol | 42.26 | 48.6 |
| TraesCS2B01G520300.1 | Wheat | mitochondrion | 56.64 | 47.85 |
| HORVU2Hr1G109820.1 | Barley | mitochondrion | 54.87 | 46.97 |
| TraesCS2D01G492400.1 | Wheat | mitochondrion | 57.08 | 46.57 |
| TraesCS2A01G492200.1 | Wheat | mitochondrion | 56.64 | 46.13 |
| GSMUA_Achr1P19920_001 | Banana | cytosol | 39.82 | 40.36 |
| HORVU2Hr1G109740.2 | Barley | plastid | 55.09 | 40.29 |
| VIT_18s0001g13880.t01 | Wine grape | nucleus | 40.04 | 39.61 |
| GSMUA_Achr3P11230_001 | Banana | cytosol | 38.72 | 37.8 |
| CDY62587 | Canola | mitochondrion, nucleus | 33.41 | 37.01 |
| KRH51726 | Soybean | cytosol, mitochondrion, nucleus, plastid | 32.74 | 36.36 |
| AT1G19860.2 | Thale cress | nucleus | 33.19 | 36.14 |
| Bra016491.1-P | Field mustard | nucleus | 31.64 | 36.02 |
| CDY39347 | Canola | mitochondrion | 33.41 | 35.87 |
| CDX83740 | Canola | nucleus | 31.19 | 35.61 |
| Bra025776.1-P | Field mustard | extracellular | 31.19 | 35.16 |
| CDY29391 | Canola | extracellular | 30.97 | 34.91 |
| KRH61063 | Soybean | nucleus | 32.52 | 34.19 |
| PGSC0003DMT400075650 | Potato | nucleus | 36.5 | 33.74 |
| Solyc12g089260.1.1 | Tomato | nucleus | 36.28 | 33.61 |
| KRH28783 | Soybean | nucleus | 21.46 | 27.79 |
| Bra012068.1-P | Field mustard | cytosol | 11.06 | 27.78 |
| Solyc02g084080.1.1 | Tomato | cytosol | 7.3 | 26.61 |
| KRH69800 | Soybean | plastid | 31.86 | 25.95 |
| KRH28782 | Soybean | cytosol, nucleus, plastid | 28.1 | 25.76 |
| KRH69802 | Soybean | mitochondrion | 30.75 | 24.43 |
| Solyc02g038790.1.1 | Tomato | cytosol | 9.96 | 22.39 |
| AT5G66270.1 | Thale cress | cytosol | 21.9 | 22.05 |
| CDX73744 | Canola | mitochondrion, nucleus | 23.23 | 21.04 |
| CDX77980 | Canola | mitochondrion, nucleus, plastid | 21.9 | 20.97 |
| CDY67080 | Canola | cytosol, nucleus, plastid | 18.36 | 20.96 |
| AT3G51180.1 | Thale cress | nucleus | 23.89 | 20.73 |
| CDY45225 | Canola | cytosol, nucleus, plastid | 18.14 | 20.05 |
| KRH76672 | Soybean | nucleus | 17.04 | 19.79 |
| Bra036832.1-P | Field mustard | nucleus | 21.24 | 19.35 |
| VIT_04s0023g03180.t01 | Wine grape | cytosol | 27.88 | 17.7 |
| Solyc02g084160.1.1 | Tomato | cytosol | 5.97 | 16.98 |
| Solyc02g084200.1.1 | Tomato | nucleus | 22.12 | 16.84 |
| PGSC0003DMT400009146 | Potato | nucleus | 21.02 | 15.7 |
| Solyc02g084110.1.1 | Tomato | cytosol | 4.65 | 13.82 |
| PGSC0003DMT400092162 | Potato | nucleus | 16.59 | 13.37 |
| PGSC0003DMT400009142 | Potato | plasma membrane | 15.27 | 12.78 |
Protein Annotations
| EMBL:BT060814 | EnsemblPlants:Zm00001d001952_P001 | EnsemblPlants:Zm00001d001952_T001 | EnsemblPlantsGene:Zm00001d001952 | EntrezGene:100281765 | Gene3D:4.10.1000.10 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf |
| PANTHER:PTHR33400 | PANTHER:PTHR33400:SF2 | PFAM:PF00642 | PFscan:PS50103 | ProteinID:ONM12555.1 | SEG:seg |
| SUPFAM:SSF90229 | UniParc:UPI00019486E1 | UniProt:C0HEQ8 | MapMan:15.5.16 | : | : |
Description
Zinc finger C-x8-C-x5-C-x3-H type family protein
Coordinates
chr2:+:3425808..3432915
Molecular Weight (calculated)
49222.9 Da
IEP (calculated)
6.674
GRAVY (calculated)
-0.565
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGSRRYKRV SWANGANLCK VRLFLSEDSP SQAGLRPQDN LQAKGSWLMH AAGPSSDDSL PPGFESLQPT SDLKIDMSQI ALIRWRCPPQ ILYNPDWCVA
101: AGEESEEVAL QNERMFGALE AIYPRPSNIP PNPLVTPDVK DSQYDDSRTQ LVPLLPVEED DASDQFEEPP VGLPSSYHQS DKYDDAISRV PQASDALFTT
201: AQQQPNGSIN TTRSGVPAEA DVVAAASAAY TAIMQSNQMG NMIDQDLLIK ILSDPAQIQR LMKEYGALKH EQSTNSSVAS MVQGPPPQMT ASVPVSIPDR
301: SNAFHNINPK LPPPPVPNRL PPASVTMNAP ASSSQAISFP SGPTRGLNYY QNLIHQHGGE RQEPLQQHGM QFAMHHQPLA SQASAADVVS SGAMPARDTK
401: QRPTKPCAYF NSARGCRNGA NCTFLHDVSA ARKEQSKGSK RIKLDSRIAG RY
101: AGEESEEVAL QNERMFGALE AIYPRPSNIP PNPLVTPDVK DSQYDDSRTQ LVPLLPVEED DASDQFEEPP VGLPSSYHQS DKYDDAISRV PQASDALFTT
201: AQQQPNGSIN TTRSGVPAEA DVVAAASAAY TAIMQSNQMG NMIDQDLLIK ILSDPAQIQR LMKEYGALKH EQSTNSSVAS MVQGPPPQMT ASVPVSIPDR
301: SNAFHNINPK LPPPPVPNRL PPASVTMNAP ASSSQAISFP SGPTRGLNYY QNLIHQHGGE RQEPLQQHGM QFAMHHQPLA SQASAADVVS SGAMPARDTK
401: QRPTKPCAYF NSARGCRNGA NCTFLHDVSA ARKEQSKGSK RIKLDSRIAG RY
001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD
Arabidopsis Description
Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.