CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016491.1-P	Field mustard	nucleus	94.12	96.73
CDX83740	Canola	nucleus	92.16	94.95
CDY39347	Canola	mitochondrion	71.57	69.36
AT1G19860.2	Thale cress	nucleus	70.34	69.16
CDY29391	Canola	extracellular	65.2	66.33
VIT_18s0001g13880.t01	Wine grape	nucleus	46.32	41.36
KRH61063	Soybean	nucleus	41.67	39.53
KRH51726	Soybean	cytosol, mitochondrion, nucleus, plastid	38.97	39.07
GSMUA_Achr1P19920_001	Banana	cytosol	38.73	35.43
Solyc12g089260.1.1	Tomato	nucleus	42.16	35.25
PGSC0003DMT400075650	Potato	nucleus	41.91	34.97
EES13033	Sorghum	mitochondrion	37.99	34.44
Zm00001d001952_P001	Maize	mitochondrion	37.01	33.41
GSMUA_Achr3P11230_001	Banana	cytosol	37.01	32.61
Os04t0663200-01	Rice	cytosol	29.41	30.53
Zm00001d026536_P002	Maize	nucleus	35.54	30.33
HORVU2Hr1G109820.1	Barley	mitochondrion	37.25	28.79
TraesCS2B01G520300.1	Wheat	mitochondrion	37.25	28.41
TraesCS2D01G492400.1	Wheat	mitochondrion	37.5	27.62
TraesCS2A01G492200.1	Wheat	mitochondrion	37.01	27.21
HORVU2Hr1G109740.2	Barley	plastid	37.01	24.43
CDY67080	Canola	cytosol, nucleus, plastid	22.06	22.73
CDY45225	Canola	cytosol, nucleus, plastid	22.3	22.25
CDX77980	Canola	mitochondrion, nucleus, plastid	25.74	22.25
CDX73744	Canola	mitochondrion, nucleus	26.23	21.44

Protein Annotations

EnsemblPlants:CDY62587	EnsemblPlantsGene:GSBRNA2T00036421001	GO:A0A078JCT6	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR000571	InterPro:Znf_CCCH	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	PFscan:PS50103	ProteinID:CDY62587
ProteinID:CDY62587.1	SEG:seg	UniParc:UPI0004EE26B7	UniProt:A0A078JCT6	MapMan:15.5.16	:

Description

BnaA08g31260DBnaA08g31260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCT6]

Coordinates

chrLK034165:-:21260..24088

Molecular Weight (calculated)

44384.4 Da

IEP (calculated)

4.848

GRAVY (calculated)

-0.744

Length

408 amino acids

Sequence
(BLAST)

001: MRALHKSKRV SWPPDFKLCQ VRLFISEDSP SQVGSESQDH LQAKSHPSED NLPPGFGGPL SANESQIKLS DIPVIKWKCS IRILLDEEWR VVAGDESKEV
101: ETQNQRELRV LEAFYPGASA IPPNPSVPAD VDNSEYDDQQ TVVIPILPVE DDDLAMDSAS DLPAQSGVDV GTEPSRTDEN TSVSSTLPAA SEIMAALTAI
201: SNNKELGSGM IDQDLLMKIL SNPKLVENLV ANNGGAGSVS SNASSPYLSE ANGVVTTTPA SSNGQYYPQP TVTHTPSMTY PPPASSDHPN YGAPPARDAS
301: YYKSLIQQHG GERQEAPPPV QQHLGYRYNP QPGGGPNPEM VNSNNNNNQR PRDSKPKIMK PCMYFNSSRG CRNGANCLYQ HDAAAYQPRN PNNGNEMPSA
401: KRMRFDRD

Best Arabidopsis Sequence Match ( AT1G19860.1 )
(BLAST)

001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD

Arabidopsis Description

Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.