CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29391	Canola	extracellular	80.52	84.54
CDY62587	Canola	mitochondrion, nucleus	69.36	71.57
CDX83740	Canola	nucleus	64.37	68.43
AT1G19860.2	Thale cress	nucleus	59.86	60.72
KRH61063	Soybean	nucleus	41.57	40.7
VIT_18s0001g13880.t01	Wine grape	nucleus	42.76	39.39
KRH51726	Soybean	cytosol, mitochondrion, nucleus, plastid	38.0	39.31
PGSC0003DMT400075650	Potato	nucleus	39.91	34.36
Solyc12g089260.1.1	Tomato	nucleus	39.67	34.22
EES13033	Sorghum	mitochondrion	35.87	33.56
GSMUA_Achr1P19920_001	Banana	cytosol	35.39	33.41
Zm00001d001952_P001	Maize	mitochondrion	35.87	33.41
GSMUA_Achr3P11230_001	Banana	cytosol	34.2	31.1
Zm00001d026536_P002	Maize	nucleus	34.68	30.54
Os04t0663200-01	Rice	cytosol	28.27	30.28
HORVU2Hr1G109820.1	Barley	mitochondrion	36.58	29.17
TraesCS2B01G520300.1	Wheat	mitochondrion	36.34	28.6
TraesCS2D01G492400.1	Wheat	mitochondrion	36.82	27.98
TraesCS2A01G492200.1	Wheat	mitochondrion	36.58	27.75
HORVU2Hr1G109740.2	Barley	plastid	36.1	24.6
CDX77980	Canola	mitochondrion, nucleus, plastid	26.13	23.31
CDX73744	Canola	mitochondrion, nucleus	26.37	22.24
CDY67080	Canola	cytosol, nucleus, plastid	20.9	22.22
CDY45225	Canola	cytosol, nucleus, plastid	21.38	22.0

Protein Annotations

EnsemblPlants:CDY39347	EnsemblPlantsGene:GSBRNA2T00067778001	GO:A0A078HN87	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR000571	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	PFAM:PF00642
PFscan:PS50103	ProteinID:CDY39347	ProteinID:CDY39347.1	SEG:seg	SUPFAM:SSF90229	UniParc:UPI0004EE9594
UniProt:A0A078HN87	MapMan:15.5.16	:	:	:	:

Description

BnaC05g15400DBnaC05g15400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HN87]

Coordinates

chrLK032446:+:9959..12473

Molecular Weight (calculated)

45520.0 Da

IEP (calculated)

5.103

GRAVY (calculated)

-0.557

Length

421 amino acids

Sequence
(BLAST)

001: MRALHKSKRV SWPPDFKLCQ QVRLFISEDS PSQVGSESQD HFQAKSSGAA HLSDDNLPPG FGGLLSPNES IKLSDIPVIK WQCSVQILLD DEWRMVAGDE
101: SKEAEAQNQR ELRVLEAFYP GASSIPPNPW VPADVDTSDY DDQQTLVIPI LVVEDDDVAA DTASELPTQS GVDVGTVPSI TNENTSTSSS LPAASEIMAA
201: LAALSNSKEQ GGSMIDKYLL IKILSNPKMV ENLVANCGSS AASVSSNATH ETNGVVATAT TPACSNGQYN PQPAVSHIPP PIVYPRQVPS DQSNYGAPPP
301: PARDASYYQS LIQQHGGERQ EAPPLPVQQH LGGYRYSLQP GAGGGGPNPE IVNSNRPRDS KPKIMKPCMY FNTSRGCRNG ANCLFQHDAT AAYQPRNVNN
401: NRNINNNPEM QSAKRMRFDR V

Best Arabidopsis Sequence Match ( AT1G19860.1 )
(BLAST)

001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD

Arabidopsis Description

Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.