CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51726	Soybean	cytosol, mitochondrion, nucleus, plastid	77.44	81.82
VIT_18s0001g13880.t01	Wine grape	nucleus	47.44	44.64
CDY62587	Canola	mitochondrion, nucleus	39.53	41.67
CDY39347	Canola	mitochondrion	40.7	41.57
Bra025776.1-P	Field mustard	extracellular	38.37	41.15
CDY29391	Canola	extracellular	38.37	41.15
GSMUA_Achr1P19920_001	Banana	cytosol	41.86	40.36
CDX83740	Canola	nucleus	36.98	40.15
Bra016491.1-P	Field mustard	nucleus	36.98	40.05
AT1G19860.2	Thale cress	nucleus	36.98	38.31
Solyc12g089260.1.1	Tomato	nucleus	43.02	37.91
PGSC0003DMT400075650	Potato	nucleus	42.79	37.63
EES13033	Sorghum	mitochondrion	35.81	34.22
GSMUA_Achr3P11230_001	Banana	cytosol	36.28	33.69
Zm00001d001952_P001	Maize	mitochondrion	34.19	32.52
Zm00001d026536_P002	Maize	nucleus	33.49	30.13
KRH28783	Soybean	nucleus	24.42	30.09
HORVU2Hr1G109820.1	Barley	mitochondrion	35.58	28.98
TraesCS2B01G520300.1	Wheat	mitochondrion	35.58	28.6
Os04t0663200-01	Rice	cytosol	26.05	28.5
TraesCS2A01G492200.1	Wheat	mitochondrion	36.28	28.11
TraesCS2D01G492400.1	Wheat	mitochondrion	35.81	27.8
KRH28782	Soybean	cytosol, nucleus, plastid	30.7	26.77
KRH69800	Soybean	plastid	32.33	25.05
HORVU2Hr1G109740.2	Barley	plastid	35.35	24.6
KRH69802	Soybean	mitochondrion	32.33	24.43
KRH76672	Soybean	nucleus	18.14	20.05

Protein Annotations

EMBL:ACUP02002151	EnsemblPlants:KRH61063	EnsemblPlantsGene:GLYMA_04G025900	EntrezGene:100783321	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR000571	InterPro:Znf_CCCH	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	PFscan:PS50103
ProteinID:KRH61063	ProteinID:KRH61063.1	SEG:seg	UniParc:UPI000233A828	UniProt:I1JT47	MapMan:15.5.16

Description

hypothetical protein

Coordinates

chr4:-:2082869..2086029

Molecular Weight (calculated)

46778.0 Da

IEP (calculated)

6.132

GRAVY (calculated)

-0.374

Length

430 amino acids

Sequence
(BLAST)

001: MRRLQTLKQV SWASDLDLCQ VRLFLSEESP SQVGLNSQDN LQAKTSLSLR PGGAGSDDIL PPGFEGTHAS SQFEIKPSQI PVIKWITPQK IVLNVTWRVV
101: SGEESKEAED QCQREMRVLE AIYPRISSIP LNPSVSMDVE EFHCIDGQTT LIPITPVEDE DAAAETLSYS LEPFHVSQSL QLASGVLKDS NSATSMQLAC
201: GLASDVAVAA SVALTNLVKS NEHGNFVDHE LLNNILNNPE VIEKLVGDYG AINNSQYVHN AGSSLAAFSN PPIPIQGQTT TPSSVVFSTT SSYTPPIGGQ
301: AEPVTTQWPP RPAVSSAIVS SPIEVPPARD VNYYKSLIQQ HGGHKETLPY SSKRQIPQAA TNYETTSYNH RGKVSKPKIM KPCIFFNSSR GCRNGANCAY
401: QHDASFQPRG NTVSGIQSSK RMKMDHEISN

Best Arabidopsis Sequence Match ( AT1G19860.1 )
(BLAST)

001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD

Arabidopsis Description

Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.