CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61063	Soybean	nucleus	81.82	77.44
VIT_18s0001g13880.t01	Wine grape	nucleus	49.14	43.76
CDY62587	Canola	mitochondrion, nucleus	39.07	38.97
CDY39347	Canola	mitochondrion	39.31	38.0
GSMUA_Achr1P19920_001	Banana	cytosol	41.52	37.89
Bra025776.1-P	Field mustard	extracellular	37.1	37.66
CDY29391	Canola	extracellular	36.85	37.41
CDX83740	Canola	nucleus	35.63	36.62
Bra016491.1-P	Field mustard	nucleus	35.38	36.27
AT1G19860.2	Thale cress	nucleus	36.85	36.14
Solyc12g089260.1.1	Tomato	nucleus	42.51	35.45
PGSC0003DMT400075650	Potato	nucleus	42.01	34.97
EES13033	Sorghum	mitochondrion	37.35	33.78
Zm00001d001952_P001	Maize	mitochondrion	36.36	32.74
GSMUA_Achr3P11230_001	Banana	cytosol	36.85	32.4
KRH28783	Soybean	nucleus	26.04	30.37
Zm00001d026536_P002	Maize	nucleus	34.89	29.71
KRH28782	Soybean	cytosol, nucleus, plastid	33.91	27.99
HORVU2Hr1G109820.1	Barley	mitochondrion	35.38	27.27
TraesCS2B01G520300.1	Wheat	mitochondrion	35.63	27.1
TraesCS2A01G492200.1	Wheat	mitochondrion	36.12	26.49
KRH69800	Soybean	plastid	35.87	26.31
TraesCS2D01G492400.1	Wheat	mitochondrion	35.63	26.17
KRH69802	Soybean	mitochondrion	35.87	25.66
Os04t0663200-01	Rice	cytosol	23.83	24.68
HORVU2Hr1G109740.2	Barley	plastid	35.14	23.14
KRH76672	Soybean	nucleus	18.67	19.54

Protein Annotations

EMBL:ACUP02003388	EnsemblPlants:KRH51726	EnsemblPlantsGene:GLYMA_06G025700	EntrezGene:100798902	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR000571	InterPro:Znf_CCCH	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	PFscan:PS50103
ProteinID:KRH51726	ProteinID:KRH51726.1	SEG:seg	UniParc:UPI0002957954	UniProt:I1K7K9	MapMan:15.5.16

Description

hypothetical protein

Coordinates

chr6:-:1962630..1967722

Molecular Weight (calculated)

44531.5 Da

IEP (calculated)

6.375

GRAVY (calculated)

-0.393

Length

407 amino acids

Sequence
(BLAST)

001: MRRLQKSKRV SWASDLDLCQ VRLFLSEESP SQVGLNSQDH VQAKTSLLLH PDGAGSDDIL PPGFEGTHAK SQSEIKLSQI PVIKWITPPK IEVNPTWRVA
101: VGEESTEVED QPQREMRVLE AIYPRISSIP QNPSVSMDVE ESHCMDDQTA LIPITPIEEE EAAAKALMDS LKPFDVSQSL QLAPGILKDS NSATSMQLAC
201: GLASDVVAAA FVALTSLVKR NEHGNFIDHE SVNHILNNPE VIVKLVRDYR AANNSQYVHN AGSSLAAFSN PSIPIQGETT TPSSVVFSGT SSYAPPIGGL
301: VEPITTQWPP RPAMSSAIVS SSIEVPPARN VNYYKSLIQQ HGGDKQETLP YSSKRQIPQS ATNYETTSYN HRGKVSKPKI MKPCIFFNTS KGCRKGANCD
401: YHHDASF

Best Arabidopsis Sequence Match ( AT1G19860.1 )
(BLAST)

001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD

Arabidopsis Description

Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.