CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRG97711
KRH11775
KRH14933
KRH31163
KRH36781
KRH43001
KRH56614
KRH59117
KRH72037
KRH73205

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51180.1	KRH11775	AT2G34710.1	21798944
AT3G51180.1	KRH36781	AT2G34710.1	21798944
AT3G51180.1	KRH43001	AT2G34710.1	21798944
AT3G51180.1	KRH59117	AT2G34710.1	21798944
AT3G51180.1	KRG97711	AT3G08530.1	21798944
AT3G51180.1	KRH14933	AT3G08530.1	21798944
AT3G51180.1	KRH31163	AT3G08530.1	21798944
AT3G51180.1	KRH73205	AT3G08530.1	21798944
AT3G51180.1	KRG93305	AT3G27960.1	21798944
AT3G51180.1	KRH56614	AT3G27960.1	21798944
AT3G51180.1	KRH72037	AT5G04170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28782	Soybean	cytosol, nucleus, plastid	56.81	44.83
Solyc02g084080.1.1	Tomato	cytosol	10.54	33.06
KRH69802	Soybean	mitochondrion	39.33	26.89
KRH69800	Soybean	plastid	37.28	26.13
Solyc02g084160.1.1	Tomato	cytosol	10.03	24.53
Solyc02g084110.1.1	Tomato	cytosol	8.74	22.37
AT5G66270.1	Thale cress	cytosol	22.36	19.38
KRH51726	Soybean	cytosol, mitochondrion, nucleus, plastid	19.54	18.67
KRH28783	Soybean	nucleus	16.71	18.62
CDY45225	Canola	cytosol, nucleus, plastid	19.54	18.58
AT3G51180.1	Thale cress	nucleus	24.68	18.43
Bra012068.1-P	Field mustard	cytosol	8.48	18.33
KRH61063	Soybean	nucleus	20.05	18.14
EES13033	Sorghum	mitochondrion	20.31	17.56
CDX73744	Canola	mitochondrion, nucleus	22.11	17.23
Zm00001d001952_P001	Maize	mitochondrion	19.79	17.04
CDX77980	Canola	mitochondrion, nucleus, plastid	20.57	16.95
Bra036832.1-P	Field mustard	nucleus	21.59	16.94
Solyc02g038790.1.1	Tomato	cytosol	8.48	16.42
Os04t0663200-01	Rice	cytosol	16.45	16.29
VIT_04s0023g03180.t01	Wine grape	cytosol	29.56	16.15
GSMUA_Achr1P19920_001	Banana	cytosol	18.51	16.14
Zm00001d026536_P002	Maize	nucleus	19.54	15.9
Solyc02g084200.1.1	Tomato	nucleus	24.16	15.82
GSMUA_Achr3P11230_001	Banana	cytosol	18.77	15.77
CDY67080	Canola	cytosol, nucleus, plastid	15.94	15.66
HORVU2Hr1G109820.1	Barley	mitochondrion	21.08	15.53
PGSC0003DMT400009146	Potato	nucleus	23.39	15.04
TraesCS2B01G520300.1	Wheat	mitochondrion	20.57	14.95
PGSC0003DMT400009142	Potato	plasma membrane	20.57	14.81
TraesCS2D01G492400.1	Wheat	mitochondrion	21.08	14.8
TraesCS2A01G492200.1	Wheat	mitochondrion	21.08	14.77
PGSC0003DMT400092162	Potato	nucleus	21.08	14.62
HORVU2Hr1G109740.2	Barley	plastid	21.08	13.27

Protein Annotations

EMBL:ACUP02000635	EnsemblPlants:KRH76672	EnsemblPlantsGene:GLYMA_01G167400	EntrezGene:102665542	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR000571	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	PANTHER:PTHR33400	PANTHER:PTHR33400:SF5
PFscan:PS50103	ProteinID:KRH76672	ProteinID:KRH76672.1	SEG:seg	SUPFAM:SSF90229	UniParc:UPI0003DE989B
UniProt:A0A0R0LC89	MapMan:15.5.16	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:50511962..50513547

Molecular Weight (calculated)

42295.5 Da

IEP (calculated)

9.731

GRAVY (calculated)

-0.511

Length

389 amino acids

Sequence
(BLAST)

001: MRVLEEVYPR ISAIPDGPSV SSNVENECYD DNESVIPLLP LIPVEEEQES VEDTEPDFPT KKLQSQNLQQ QYIPPATSLI NPQCNNINSR CSGKPLPATS
101: SESDIVAAAS AAAVAAIIKS NEQGSLIDMD LLRKLFTDPT MIEKLIEQNR TATTTVSAPS NILSIPTSYS KPAAVASETK PTAPTTTMGL WPTSVTRKAT
201: HEKPSITSVP SVSLAMPLTP QTVTRHKPQS THRPVKKNIP HMPNGVLPSL NTHSPQQGLK RAAPLASVSS SEFKTVAVPS VSANMHSVAK QMKSTTSGAV
301: KDVNYYRSLV KEHGTHKQGK KSLRNLQGLK RSQGEVKFKS KKPCIYFGTP RGCRNGSDCP FQHDMPNQWE AGNVLMAQNA KRLKVGREI

Best Arabidopsis Sequence Match ( AT1G19860.1 )
(BLAST)

001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD

Arabidopsis Description

Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.