CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45225	Canola	cytosol, nucleus, plastid	69.44	67.24
AT5G66270.1	Thale cress	cytosol	39.9	35.19
CDX77980	Canola	mitochondrion, nucleus, plastid	34.09	28.6
Solyc02g084080.1.1	Tomato	cytosol	8.84	28.23
CDX73744	Canola	mitochondrion, nucleus	34.6	27.45
Solyc02g038790.1.1	Tomato	cytosol	13.13	25.87
CDY62587	Canola	mitochondrion, nucleus	22.73	22.06
KRH28782	Soybean	cytosol, nucleus, plastid	26.77	21.5
CDX83740	Canola	nucleus	20.96	20.96
CDY39347	Canola	mitochondrion	22.22	20.9
CDY29391	Canola	extracellular	20.96	20.7
GSMUA_Achr3P11230_001	Banana	cytosol	23.48	20.09
KRH69802	Soybean	mitochondrion	28.79	20.04
KRH28783	Soybean	nucleus	17.42	19.77
GSMUA_Achr1P19920_001	Banana	cytosol	21.97	19.51
Solyc02g084160.1.1	Tomato	cytosol	7.83	19.5
KRH69800	Soybean	plastid	27.27	19.46
Os04t0663200-01	Rice	cytosol	19.19	19.34
EES13033	Sorghum	mitochondrion	21.46	18.89
Solyc02g084200.1.1	Tomato	nucleus	27.78	18.52
Zm00001d001952_P001	Maize	mitochondrion	20.96	18.36
TraesCS2B01G520300.1	Wheat	mitochondrion	24.24	17.94
HORVU2Hr1G109820.1	Barley	mitochondrion	23.48	17.61
PGSC0003DMT400009146	Potato	nucleus	26.26	17.19
Zm00001d026536_P002	Maize	nucleus	20.71	17.15
TraesCS2D01G492400.1	Wheat	mitochondrion	23.99	17.15
TraesCS2A01G492200.1	Wheat	mitochondrion	23.74	16.94
Solyc02g084110.1.1	Tomato	cytosol	6.31	16.45
KRH76672	Soybean	nucleus	15.66	15.94
HORVU2Hr1G109740.2	Barley	plastid	24.24	15.53
PGSC0003DMT400009142	Potato	plasma membrane	20.96	15.37
PGSC0003DMT400092162	Potato	nucleus	20.96	14.79
VIT_04s0023g03180.t01	Wine grape	cytosol	25.0	13.9

Protein Annotations

EnsemblPlants:CDY67080	EnsemblPlantsGene:GSBRNA2T00058782001	GO:A0A078JKW3	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR000571	InterPro:Znf_CCCH	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	PFscan:PS50103	ProteinID:CDY67080
ProteinID:CDY67080.1	SEG:seg	UniParc:UPI0004EE77BA	UniProt:A0A078JKW3	MapMan:15.5.16	:

Description

BnaCnng53410DBnaCnng53410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKW3]

Coordinates

chrLK035735:+:1150..3072

Molecular Weight (calculated)

43200.6 Da

IEP (calculated)

9.777

GRAVY (calculated)

-0.430

Length

396 amino acids

Sequence
(BLAST)

001: MGSNVKKARV SWPSDSMLFQ VKMFKTEDYP AKAGAQTCSK SKASKDLHRG TVYSTRPPNV PLIKWKLPPK FILNDHMLVA SGEESTETGS ENLRIAKVLE
101: AFYPHRSLIP SRPFISPSVQ VDDSNTPIIR VTPIEDDDDQ PALRSSIAPP SVFGLGPDLS QTALSTLLNT KEEGSMVDAG LLVKFLTDPT IINNLLNAAA
201: KPLETGNNNN NTKPLPRLVN SPPGNGVTPV LAAAQSIVSH VPTQTMAPLV LNTYPSSCAV VNPLPRVEKS LETSSVVVSE PQCQYRNGTD APSAYPMNIT
301: RDDYFKNLIR EHGGVVAPAT NNYKRRVDNN NNNNNDKTKA LVIKVKSQKA CMFFGRGRGC KLGESCLYLH DPSKRLWTDD VAAAPAPRAK RHKFGT

Best Arabidopsis Sequence Match ( AT5G66270.1 )
(BLAST)

001: MMKKTKKGRV SWASDSMLCQ VKLFLSDDCP VKVASNLPPG FEATDYATKR IISHIPRIKW KRPPLFVLDD ALLVGSGGKS IETRSENLRI SKVLEAFYPH
101: RSVIPSRPSL TLAVEEEHYD DGKTPNIPLT HVEDERDAAA ESSHSFEAPA AVSGLGPELS LLASAALSAL TKEQGSQVDP DLLVKLLSDP KIVENLINGM
201: KGKPLETANN SLNTDITEPR LAPQHVTSTT MDRNPPPMPG NVAPHNVPVS VQSSATDPPL PKPNQPMSSA LSMNLTLQKP TPVVHNYPLS SGIKVEDSYT
301: AAPLKPSTGD DVVVSEQKTQ LLFPCSSWNM NKVPESARTE TDPQIRNGNT NRDDQVSAKP VKDLDYFKNL IREHGAVKPA TTETNNYKGR VDHKKIVKVR
401: IQKPCMYFNR PKGCRMGESC LYLHDSSKRL WTDVAPPHFP RAKRLKFGS

Arabidopsis Description

Zinc finger CCCH domain-containing protein 68 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH61]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.