CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62587	Canola	mitochondrion, nucleus	94.95	92.16
AT1G19860.2	Thale cress	nucleus	72.22	68.92
CDY29391	Canola	extracellular	66.16	65.34
CDY39347	Canola	mitochondrion	68.43	64.37
VIT_18s0001g13880.t01	Wine grape	nucleus	43.94	38.07
KRH61063	Soybean	nucleus	40.15	36.98
KRH51726	Soybean	cytosol, mitochondrion, nucleus, plastid	36.62	35.63
GSMUA_Achr1P19920_001	Banana	cytosol	37.63	33.41
Solyc12g089260.1.1	Tomato	nucleus	40.91	33.2
PGSC0003DMT400075650	Potato	nucleus	40.15	32.52
EES13033	Sorghum	mitochondrion	36.11	31.78
Zm00001d001952_P001	Maize	mitochondrion	35.61	31.19
GSMUA_Achr3P11230_001	Banana	cytosol	35.86	30.67
Os04t0663200-01	Rice	cytosol	30.3	30.53
Zm00001d026536_P002	Maize	nucleus	34.09	28.24
HORVU2Hr1G109820.1	Barley	mitochondrion	36.11	27.08
TraesCS2B01G520300.1	Wheat	mitochondrion	36.36	26.92
TraesCS2D01G492400.1	Wheat	mitochondrion	36.36	25.99
TraesCS2A01G492200.1	Wheat	mitochondrion	36.11	25.77
HORVU2Hr1G109740.2	Barley	plastid	35.86	22.98
CDY67080	Canola	cytosol, nucleus, plastid	20.96	20.96
CDY45225	Canola	cytosol, nucleus, plastid	20.96	20.29
CDX77980	Canola	mitochondrion, nucleus, plastid	23.74	19.92
CDX73744	Canola	mitochondrion, nucleus	23.99	19.04

Protein Annotations

EnsemblPlants:CDX83740	EnsemblPlantsGene:GSBRNA2T00139469001	GO:A0A078D3L4	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR000571	InterPro:Znf_CCCH	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	PFscan:PS50103	ProteinID:CDX83740
ProteinID:CDX83740.1	SEG:seg	UniParc:UPI0004EE9559	MapMan:15.5.16	:	:

Description

BnaC08g19050D

Coordinates

chrLK031834:+:102265..104188

Molecular Weight (calculated)

42914.6 Da

IEP (calculated)

4.592

GRAVY (calculated)

-0.728

Length

396 amino acids

Sequence
(BLAST)

001: MFEITGPVVR LFVSDDSPSQ VGSESQDHLQ AKSHPSEDNL PPGFGGPLSA NESQIKLSDI PVIKWKCSIR IMLDEEWRVV AGEESKEVEA QNQRELRVLE
101: AFYPGASAIP PNPSVPADVD NSDYDDQQTV VIPILPVEDD DLAMDSASDL PSQSGVDVGT EPSRTDENTS VSSTLPAASE IMAALTAISN NKELGRGMID
201: QDLLMKILSN PKLVENLVAN SGGAGSVSSN GSRPYLSEAN GVVTTTPASS NGQYYPQPTV THTPSITYPP PAPSDHPNYG APPARDASYY KSLIQQHGGE
301: RQEAPPPVQQ HLGYRYNPQP GGGPNPEMVN SNNNNNQRPR DSKPKIMKPC MYFNSSRGCR NGANCLYQHD AAAYQPRNPN NGNEMPSAKR MRFDRD

Best Arabidopsis Sequence Match ( AT1G19860.2 )
(BLAST)

001: MLTSPCLLSL DCMFEITGPM VRLFISEDSP SQVGSESQDH LQAKSPLASH PSDDNLPPGF GGPFSANESQ IKLSDIPLIK WKCSVQILLD REWKVVAGDE
101: SKEVEAQNER ELRVLEAFYP GASSIPPNPS VPADVEDSHH DDQQTIVIPI LPVEDDDIAM DSASDFPTQS GVDVGTEPSI TDENTSTSST LPAGPDIMAA
201: LSAISNSKEQ GSMIDQDLLI KILSNPKLVE NLVANRGSAG SVSSNTSSLY SSSTHEANGV VTTAPISSNG QFYAQPPITH IPPMAYTPHA PQDQPNYGAP
301: PARDASYYKN LIQQHGGDRQ ETPPVQHLGY RYNLQPGGGP NPEMVNSSNN NQRPRDSKPK IMKACMYFNS ARGCRHGANC MYQHDATPYQ PRNLNNGNIN
401: TSDMQNAKRM RFDRD

Arabidopsis Description

Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.