Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016491.1-P | Field mustard | nucleus | 69.4 | 72.54 |
| CDX83740 | Canola | nucleus | 68.92 | 72.22 |
| CDY62587 | Canola | mitochondrion, nucleus | 69.16 | 70.34 |
| Bra025776.1-P | Field mustard | extracellular | 60.96 | 63.09 |
| CDY29391 | Canola | extracellular | 60.96 | 63.09 |
| CDY39347 | Canola | mitochondrion | 60.72 | 59.86 |
| VIT_18s0001g13880.t01 | Wine grape | nucleus | 41.69 | 37.86 |
| KRH61063 | Soybean | nucleus | 38.31 | 36.98 |
| KRH51726 | Soybean | cytosol, mitochondrion, nucleus, plastid | 36.14 | 36.85 |
| GSMUA_Achr1P19920_001 | Banana | cytosol | 37.11 | 34.53 |
| PGSC0003DMT400075650 | Potato | nucleus | 39.52 | 33.54 |
| Solyc12g089260.1.1 | Tomato | nucleus | 39.04 | 33.2 |
| Zm00001d001952_P001 | Maize | mitochondrion | 36.14 | 33.19 |
| EES13033 | Sorghum | mitochondrion | 35.9 | 33.11 |
| GSMUA_Achr3P11230_001 | Banana | cytosol | 35.18 | 31.53 |
| Os04t0663200-01 | Rice | cytosol | 28.43 | 30.03 |
| Zm00001d026536_P002 | Maize | nucleus | 33.25 | 28.87 |
| HORVU2Hr1G109820.1 | Barley | mitochondrion | 36.39 | 28.6 |
| TraesCS2B01G520300.1 | Wheat | mitochondrion | 36.39 | 28.22 |
| TraesCS2D01G492400.1 | Wheat | mitochondrion | 36.63 | 27.44 |
| TraesCS2A01G492200.1 | Wheat | mitochondrion | 36.39 | 27.21 |
| HORVU2Hr1G109740.2 | Barley | plastid | 36.39 | 24.43 |
| AT5G66270.1 | Thale cress | cytosol | 26.02 | 24.05 |
| AT3G51180.1 | Thale cress | nucleus | 26.02 | 20.73 |
Protein Annotations
| ArrayExpress:AT1G19860 | EnsemblPlants:AT1G19860.2 | EnsemblPlantsGene:AT1G19860 | EntrezGene:838574 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR000571 | InterPro:Znf_CCCH | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF2 | PFscan:PS50103 |
| ProteinID:ANM60835.1 | RefSeq:AT1G19860 | RefSeq:AT1G19860-TAIR-G | RefSeq:NP_001323091.1 | SEG:seg | TAIR:AT1G19860 |
| Unigene:At.41731 | UniParc:UPI000848F9B3 | UniProt:A0A1P8AW26 | MapMan:15.5.16 | : | : |
Description
Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
Coordinates
chr1:-:6891382..6894752
Molecular Weight (calculated)
45119.4 Da
IEP (calculated)
4.642
GRAVY (calculated)
-0.612
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTSPCLLSL DCMFEITGPM VRLFISEDSP SQVGSESQDH LQAKSPLASH PSDDNLPPGF GGPFSANESQ IKLSDIPLIK WKCSVQILLD REWKVVAGDE
101: SKEVEAQNER ELRVLEAFYP GASSIPPNPS VPADVEDSHH DDQQTIVIPI LPVEDDDIAM DSASDFPTQS GVDVGTEPSI TDENTSTSST LPAGPDIMAA
201: LSAISNSKEQ GSMIDQDLLI KILSNPKLVE NLVANRGSAG SVSSNTSSLY SSSTHEANGV VTTAPISSNG QFYAQPPITH IPPMAYTPHA PQDQPNYGAP
301: PARDASYYKN LIQQHGGDRQ ETPPVQHLGY RYNLQPGGGP NPEMVNSSNN NQRPRDSKPK IMKACMYFNS ARGCRHGANC MYQHDATPYQ PRNLNNGNIN
401: TSDMQNAKRM RFDRD
101: SKEVEAQNER ELRVLEAFYP GASSIPPNPS VPADVEDSHH DDQQTIVIPI LPVEDDDIAM DSASDFPTQS GVDVGTEPSI TDENTSTSST LPAGPDIMAA
201: LSAISNSKEQ GSMIDQDLLI KILSNPKLVE NLVANRGSAG SVSSNTSSLY SSSTHEANGV VTTAPISSNG QFYAQPPITH IPPMAYTPHA PQDQPNYGAP
301: PARDASYYKN LIQQHGGDRQ ETPPVQHLGY RYNLQPGGGP NPEMVNSSNN NQRPRDSKPK IMKACMYFNS ARGCRHGANC MYQHDATPYQ PRNLNNGNIN
401: TSDMQNAKRM RFDRD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.