CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025776.1-P	Field mustard	extracellular	98.75	98.75
CDY39347	Canola	mitochondrion	84.54	80.52
CDX83740	Canola	nucleus	65.34	66.16
CDY62587	Canola	mitochondrion, nucleus	66.33	65.2
AT1G19860.2	Thale cress	nucleus	63.09	60.96
KRH61063	Soybean	nucleus	41.15	38.37
VIT_18s0001g13880.t01	Wine grape	nucleus	43.14	37.86
KRH51726	Soybean	cytosol, mitochondrion, nucleus, plastid	37.41	36.85
PGSC0003DMT400075650	Potato	nucleus	40.4	33.13
Solyc12g089260.1.1	Tomato	nucleus	40.15	32.99
GSMUA_Achr1P19920_001	Banana	cytosol	36.41	32.74
EES13033	Sorghum	mitochondrion	35.41	31.56
GSMUA_Achr3P11230_001	Banana	cytosol	36.16	31.32
Zm00001d001952_P001	Maize	mitochondrion	34.91	30.97
Zm00001d026536_P002	Maize	nucleus	34.41	28.87
Os04t0663200-01	Rice	cytosol	27.93	28.5
HORVU2Hr1G109820.1	Barley	mitochondrion	36.91	28.03
TraesCS2B01G520300.1	Wheat	mitochondrion	36.91	27.66
TraesCS2D01G492400.1	Wheat	mitochondrion	37.16	26.9
TraesCS2A01G492200.1	Wheat	mitochondrion	36.91	26.67
HORVU2Hr1G109740.2	Barley	plastid	36.41	23.62
CDX77980	Canola	mitochondrion, nucleus, plastid	25.69	21.82
CDY67080	Canola	cytosol, nucleus, plastid	20.7	20.96
CDX73744	Canola	mitochondrion, nucleus	25.94	20.84
CDY45225	Canola	cytosol, nucleus, plastid	20.45	20.05

Protein Annotations

EnsemblPlants:CDY29391	EnsemblPlantsGene:GSBRNA2T00042974001	GO:A0A078GV36	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR000571	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	PFAM:PF00642
PFscan:PS50103	ProteinID:CDY29391	ProteinID:CDY29391.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF90229
UniParc:UPI0004EF4549	UniProt:A0A078GV36	MapMan:15.5.16	:	:	:

Description

BnaA06g14050DBnaA06g14050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GV36]

Coordinates

chrLK032236:+:201703..203371

Molecular Weight (calculated)

43185.3 Da

IEP (calculated)

4.808

GRAVY (calculated)

-0.531

Length

401 amino acids

Sequence
(BLAST)

001: MFFFGVLSFL FEVRLFISED SPSQVGSESQ DHFQAKSSGA AHLSDDNLPP GFGGMLSPNE SQIKLSDIPV IKWNCSNRTL LDDEWRMVAG DESKEAEAQN
101: QRELRVLEAF YPGASSIPPN PSVPADVDTS DYDDQQTLVI PILVVEDDDV ATDTASELPT QSGVDVQSIT NENTSTSSSL PAASEIMAAL SALSNSKEQG
201: GSMIDKDLLI KILSNPKMVE NLVTNCGSSA GSVSSNASHE AKGVVATATT PACSNGQYNP QPAVAHIPPP MVYLPPARSN QSNYGAPPPP AKDASYYKSL
301: IQQHGGERQE APPPPVQHLG GYRYSQPGAG GGGPNPEIVS NRPRDSKPKI MKPCMYFNTS RGCRNGANCL FQHDATAAYQ PRNINNNPEM QRAKRMRFDR
401: V

Best Arabidopsis Sequence Match ( AT1G19860.1 )
(BLAST)

001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD

Arabidopsis Description

Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.