Factsheet for HORVU2Hr1G109820.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
extracellular 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G010250.3
HORVU0Hr1G021800.1
HORVU1Hr1G092980.14
HORVU3Hr1G055550.3
HORVU4Hr1G024710.4
HORVU4Hr1G026030.9
HORVU4Hr1G060490.1
HORVU4Hr1G060530.1
HORVU5Hr1G010650.1
HORVU5Hr1G043650.2
HORVU5Hr1G048010.1
HORVU5Hr1G093150.2
HORVU6Hr1G069310.1
HORVU7Hr1G082720.10

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51180.1	HORVU0Hr1G021800.1	AT1G01440.1	21798944
AT3G51180.1	HORVU1Hr1G092980.14	AT1G01440.1	21798944
AT3G51180.1	HORVU3Hr1G055550.3	AT1G01440.1	21798944
AT3G51180.1	HORVU7Hr1G082720.10	AT1G01440.1	21798944
AT3G51180.1	HORVU4Hr1G060490.1	AT2G29400.1	21798944
AT3G51180.1	HORVU4Hr1G060530.1	AT2G29400.1	21798944
AT3G51180.1	HORVU0Hr1G010250.3	AT2G34710.1	21798944
AT3G51180.1	HORVU5Hr1G010650.1	AT2G34710.1	21798944
AT3G51180.1	HORVU5Hr1G093150.2	AT2G34710.1	21798944
AT3G51180.1	HORVU4Hr1G024710.4	AT3G08530.1	21798944
AT3G51180.1	HORVU5Hr1G048010.1	AT3G08530.1	21798944
AT3G51180.1	HORVU6Hr1G069310.1	AT3G27960.1	21798944
AT3G51180.1	HORVU0Hr1G021800.1	AT4G01090.1	21798944
AT3G51180.1	HORVU1Hr1G092980.14	AT4G01090.1	21798944
AT3G51180.1	HORVU3Hr1G055550.3	AT4G01090.1	21798944
AT3G51180.1	HORVU7Hr1G082720.10	AT4G01090.1	21798944
AT3G51180.1	HORVU4Hr1G026030.9	AT5G04170.1	21798944
AT3G51180.1	HORVU5Hr1G043650.2	AT5G04170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G520300.1	Wheat	mitochondrion	81.63	80.56
HORVU2Hr1G109740.2	Barley	plastid	93.94	80.26
TraesCS2D01G492400.1	Wheat	mitochondrion	84.09	80.14
TraesCS2A01G492200.1	Wheat	mitochondrion	83.71	79.64
EES13033	Sorghum	mitochondrion	47.92	56.22
Zm00001d001952_P001	Maize	mitochondrion	46.97	54.87
Zm00001d026536_P002	Maize	nucleus	45.64	50.42
Os04t0663200-01	Rice	cytosol	36.17	48.6
VIT_18s0001g13880.t01	Wine grape	nucleus	35.23	40.7
GSMUA_Achr1P19920_001	Banana	cytosol	34.28	40.58
CDY62587	Canola	mitochondrion, nucleus	28.79	37.25
Bra025776.1-P	Field mustard	extracellular	28.22	37.16
Bra016491.1-P	Field mustard	nucleus	27.84	37.03
GSMUA_Achr3P11230_001	Banana	cytosol	32.39	36.93
CDY29391	Canola	extracellular	28.03	36.91
CDY39347	Canola	mitochondrion	29.17	36.58
AT1G19860.2	Thale cress	nucleus	28.6	36.39
CDX83740	Canola	nucleus	27.08	36.11
KRH61063	Soybean	nucleus	28.98	35.58
KRH51726	Soybean	cytosol, mitochondrion, nucleus, plastid	27.27	35.38
Solyc12g089260.1.1	Tomato	nucleus	31.63	34.22
PGSC0003DMT400075650	Potato	nucleus	31.63	34.15
Bra012068.1-P	Field mustard	cytosol	11.55	33.89
KRH28783	Soybean	nucleus	19.32	29.23
Solyc02g084080.1.1	Tomato	cytosol	6.82	29.03
KRH69800	Soybean	plastid	27.84	26.49
AT5G66270.1	Thale cress	cytosol	21.97	25.84
KRH69802	Soybean	mitochondrion	27.65	25.66
KRH28782	Soybean	cytosol, nucleus, plastid	23.86	25.56
CDY67080	Canola	cytosol, nucleus, plastid	17.61	23.48
AT3G51180.1	Thale cress	nucleus	23.11	23.42
Solyc02g038790.1.1	Tomato	cytosol	8.9	23.38
CDY45225	Canola	cytosol, nucleus, plastid	17.42	22.49
CDX77980	Canola	mitochondrion, nucleus, plastid	19.7	22.03
CDX73744	Canola	mitochondrion, nucleus	20.64	21.84
KRH76672	Soybean	nucleus	15.53	21.08
Bra036832.1-P	Field mustard	nucleus	19.7	20.97
VIT_04s0023g03180.t01	Wine grape	cytosol	26.33	19.52
PGSC0003DMT400009146	Potato	nucleus	20.64	18.02
Solyc02g084160.1.1	Tomato	cytosol	5.3	17.61
Solyc02g084200.1.1	Tomato	nucleus	19.32	17.17
PGSC0003DMT400092162	Potato	nucleus	16.1	15.15
PGSC0003DMT400009142	Potato	plasma membrane	13.26	12.96
Solyc02g084110.1.1	Tomato	cytosol	3.6	12.5

Protein Annotations

EnsemblPlants:HORVU2Hr1G109820.1	EnsemblPlantsGene:HORVU2Hr1G109820	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571
InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	PFscan:PS50103	SEG:seg
SUPFAM:SSF90229	UniParc:UPI000295BB46	UniProt:M0UFK9	MapMan:15.5.16	:	:

Description

No Description!

Coordinates

chrchr2H:+:718118871..718123707

Molecular Weight (calculated)

56835.9 Da

IEP (calculated)

8.463

GRAVY (calculated)

-0.717

Length

528 amino acids

Sequence
(BLAST)

001: MGSRRSRRVS WATGPSLCKV RLFISEDSPS QAGLRPQDNL QAKGSTSLMH AAGSSSDDSL PPGFESLQPA NDLKIDISQI PIIRWKCPPH ILLNPEWQVA
101: SGKESREIPV QNERMFGVLE AIYPRASNIP PNPFVSLDVK DAHYDDSETP LIPVIPVEDD DASDQSEGPM VDPPNDYHQS NDAPLASNAS VTAAQQHPHG
201: STGVEPDVLA AASAAYTAIM QSNQKGSMVD RDLLVKILSD PVQVERLMKE YNQIRQKQSA SSSVVAPMPR GPPPQMTMSA PASYSNHMTT FQNTNSTLPP
301: PPQMAPRPMM NRLPQGYPPV PMNHPPGSSP AINLRPGSSP AMSRPQGPSP VMSRPQGPSP VMSRPPGPNP AMSHPPGSNP ATSNPPGSNP AMSHPPGSNL
401: AMSYPPGSSS PAMNFSGAPP RAINYYKTLI HQHGGERQES LEQHGRQFGM YPQSAPPQTS GIDAMNGASV TNRDMKTRPT RPCAYFNGPR GCRNGANCTF
501: LHDSSPPSRQ QENDSKRLKL DSRIAGRN

Best Arabidopsis Sequence Match ( AT1G19860.1 )
(BLAST)

001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD

Arabidopsis Description

Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.