Factsheet for GSMUA_Achr1P19920_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P09630_001
GSMUA_Achr2P13050_001
GSMUA_Achr2P13060_001
GSMUA_Achr3P25070_001
GSMUA_Achr4P28360_001
GSMUA_Achr4P31660_001
GSMUA_Achr5P02420_001
GSMUA_Achr7P01060_001
GSMUA_Achr7P14150_001
GSMUA_Achr8P02960_001
GSMUA_Achr8P17120_001
GSMUA_Achr8P19510_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51180.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT3G51180.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT3G51180.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT3G51180.1	GSMUA_Achr3P25070_001	AT1G01440.1	21798944
AT3G51180.1	GSMUA_Achr7P14150_001	AT1G01440.1	21798944
AT3G51180.1	GSMUA_Achr8P19510_001	AT2G29400.1	21798944
AT3G51180.1	GSMUA_Achr2P13050_001	AT2G34710.1	21798944
AT3G51180.1	GSMUA_Achr2P13060_001	AT2G34710.1	21798944
AT3G51180.1	GSMUA_Achr4P28360_001	AT2G34710.1	21798944
AT3G51180.1	GSMUA_Achr4P31660_001	AT2G34710.1	21798944
AT3G51180.1	GSMUA_Achr5P02420_001	AT2G34710.1	21798944
AT3G51180.1	GSMUA_Achr7P01060_001	AT2G34710.1	21798944
AT3G51180.1	GSMUA_Achr8P02960_001	AT2G34710.1	21798944
AT3G51180.1	GSMUA_Achr10P...	AT3G27960.1	21798944
AT3G51180.1	GSMUA_Achr2P09630_001	AT3G27960.1	21798944
AT3G51180.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT3G51180.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT3G51180.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT3G51180.1	GSMUA_Achr3P25070_001	AT4G01090.1	21798944
AT3G51180.1	GSMUA_Achr7P14150_001	AT4G01090.1	21798944
AT3G51180.1	GSMUA_Achr8P17120_001	AT5G04170.1	21798944
AT3G51180.1	GSMUA_AchrUn_...	AT5G04170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P11230_001	Banana	cytosol	62.11	59.83
KRH61063	Soybean	nucleus	40.36	41.86
KRH51726	Soybean	cytosol, mitochondrion, nucleus, plastid	37.89	41.52
EES13033	Sorghum	mitochondrion	41.7	41.33
VIT_18s0001g13880.t01	Wine grape	nucleus	41.7	40.7
Zm00001d001952_P001	Maize	mitochondrion	40.36	39.82
CDY62587	Canola	mitochondrion, nucleus	35.43	38.73
Bra016491.1-P	Field mustard	nucleus	33.63	37.78
CDX83740	Canola	nucleus	33.41	37.63
AT1G19860.2	Thale cress	nucleus	34.53	37.11
Bra025776.1-P	Field mustard	extracellular	32.96	36.66
CDY29391	Canola	extracellular	32.74	36.41
Zm00001d026536_P002	Maize	nucleus	39.01	36.4
CDY39347	Canola	mitochondrion	33.41	35.39
TraesCS2B01G520300.1	Wheat	mitochondrion	41.26	34.39
HORVU2Hr1G109820.1	Barley	mitochondrion	40.58	34.28
Solyc12g089260.1.1	Tomato	nucleus	37.44	34.22
PGSC0003DMT400075650	Potato	nucleus	37.44	34.15
TraesCS2D01G492400.1	Wheat	mitochondrion	41.48	33.39
TraesCS2A01G492200.1	Wheat	mitochondrion	41.48	33.33
Os04t0663200-01	Rice	cytosol	28.48	32.32
Bra012068.1-P	Field mustard	cytosol	12.11	30.0
HORVU2Hr1G109740.2	Barley	plastid	40.81	29.45
KRH28783	Soybean	nucleus	21.75	27.79
Solyc02g084080.1.1	Tomato	cytosol	7.17	25.81
KRH69800	Soybean	plastid	31.61	25.41
KRH28782	Soybean	cytosol, nucleus, plastid	27.58	24.95
AT5G66270.1	Thale cress	cytosol	24.89	24.72
KRH69802	Soybean	mitochondrion	31.17	24.43
Solyc02g038790.1.1	Tomato	cytosol	10.31	22.89
CDY67080	Canola	cytosol, nucleus, plastid	19.51	21.97
AT3G51180.1	Thale cress	nucleus	25.11	21.5
CDX73744	Canola	mitochondrion, nucleus	23.99	21.44
CDX77980	Canola	mitochondrion, nucleus, plastid	22.65	21.4
CDY45225	Canola	cytosol, nucleus, plastid	19.06	20.78
Bra036832.1-P	Field mustard	nucleus	21.97	19.76
VIT_04s0023g03180.t01	Wine grape	cytosol	30.72	19.24
KRH76672	Soybean	nucleus	16.14	18.51
Solyc02g084160.1.1	Tomato	cytosol	6.05	16.98
Solyc02g084200.1.1	Tomato	nucleus	22.42	16.84
PGSC0003DMT400009146	Potato	nucleus	22.42	16.53
Solyc02g084110.1.1	Tomato	cytosol	5.16	15.13
PGSC0003DMT400092162	Potato	nucleus	17.49	13.9
PGSC0003DMT400009142	Potato	plasma membrane	15.7	12.96

Protein Annotations

EnsemblPlants:GSMUA_Achr1P19920_001	EnsemblPlants:GSMUA_Achr1T19920_001	EnsemblPlantsGene:GSMUA_Achr1G19920_001	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR000571	InterPro:Znf_CCCH	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	PFscan:PS50103	SEG:seg
UniParc:UPI000296D61C	UniProt:M0S1F0	MapMan:15.5.16	:	:	:

Description

Putative Zinc finger CCCH domain-containing protein 30 [Source:GMGC_GENE;Acc:GSMUA_Achr1G19920_001]

Coordinates

chr1:-:14939398..14948634

Molecular Weight (calculated)

48201.1 Da

IEP (calculated)

6.674

GRAVY (calculated)

-0.382

Length

446 amino acids

Sequence
(BLAST)

001: MAGLKQPKRV SWAKDLHQVR LFLAEDAPAV SGLGTQDNLQ AKGSWLLHAT SIGNDDSSLP PGFEAPHPAY QFRLEISQIP LVKWKCPLNI LLDPEWVVVA
101: GEESSEVAVQ DQRQLRILEA IYPRVPSIPP NPSVSSEVQD SFYDDTRTPV IPITAIEDEE SSEQLETAAP TFSSTQSQQT SHVTQPAPTV PRSETTSGRI
201: PPIAEPDVIA AASAAFTAIM KTNEEGSMID RDLLINILSN PSLVEKLVTE YGAPKQSQAL LAPVSVAPPC SSVPVQHLAL APPVPPPLPQ INPSTPSLSV
301: FRTSQMYPLP SSVPPQSVNP HALPPVQIPV KRQSSGQAAS RDANYLKSLI QQHGGEKQDG SDLNSVHAAS CQNNVVATNA VDLYAPRLQR EARPKIPRPC
401: AYFNTPKGCR HGASCSYQHD PSLPQRIEPP KGSKRIKLDR GIAGRN

Best Arabidopsis Sequence Match ( AT1G19860.1 )
(BLAST)

001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD

Arabidopsis Description

Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.