Factsheet for GSMUA_Achr8P17120_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	52.69	82.12
Solyc04g016400.2.1	Tomato	cytosol	62.01	71.49
PGSC0003DMT400033117	Potato	cytosol	61.29	66.54
Os12t0137100-01	Rice	cytosol, nucleus, plastid	69.18	66.1
Zm00001d052458_P001	Maize	extracellular	69.18	65.2
KRH33201	Soybean	endoplasmic reticulum	66.31	65.14
CDY56710	Canola	cytosol, extracellular, plastid	65.95	65.02
EES09228	Sorghum	cytosol	70.25	64.47
VIT_00s0252g00130.t01	Wine grape	cytosol, plasma membrane, plastid	63.44	64.13
TraesCS5B01G135100.1	Wheat	cytosol, nucleus, plastid	68.82	63.37
Os11t0140600-01	Rice	cytosol	69.53	62.99
Bra034103.1-P	Field mustard	cytosol	67.74	59.25
CDY41334	Canola	cytosol	67.74	59.06
CDY67472	Canola	cytosol	62.01	57.67
TraesCS4D01G127600.1	Wheat	cytosol	65.95	56.97
TraesCS5D01G142800.1	Wheat	nucleus	67.38	56.63
TraesCS4B01G132800.1	Wheat	nucleus	66.31	56.4
TraesCS4A01G186100.1	Wheat	golgi	65.59	56.31
Solyc10g079890.1.1	Tomato	plastid	68.46	56.18
TraesCS5A01G136100.1	Wheat	nucleus	67.03	56.16
PGSC0003DMT400076703	Potato	cytosol, plastid	68.46	55.52
AT5G04170.1	Thale cress	cytosol	65.95	51.98
CDX70254	Canola	cytosol	64.52	49.32
HORVU4Hr1G026030.9	Barley	cytosol	57.71	49.24
Bra009480.1-P	Field mustard	cytosol	63.8	48.77
HORVU5Hr1G043650.2	Barley	plastid	67.03	48.57
GSMUA_Achr3P22660_001	Banana	plastid	40.86	48.31
CDY41394	Canola	mitochondrion	64.16	44.31
CDX80907	Canola	cytosol	63.8	44.06
KRH72037	Soybean	cytosol, plasma membrane, plastid	40.86	44.02
AT3G10300.6	Thale cress	cytosol	58.06	42.97
Bra005797.1-P	Field mustard	cytosol	62.37	42.34

Protein Annotations

EnsemblPlants:GSMUA_Achr8P17120_001	EnsemblPlants:GSMUA_Achr8T17120_001	EnsemblPlantsGene:GSMUA_Achr8G17120_001	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10183
PANTHER:PTHR10183:SF372	PFAM:PF00036	PFAM:PF13202	PFscan:PS50222	ScanProsite:PS00018	SEG:seg
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI000294C0AC	UniProt:M0TR65	MapMan:35.1	:

Description

Probable calcium-binding protein CML49 [Source:GMGC_GENE;Acc:GSMUA_Achr8G17120_001]

Coordinates

chr8:-:16066277..16087634

Molecular Weight (calculated)

29855.3 Da

IEP (calculated)

6.525

GRAVY (calculated)

-0.238

Length

279 amino acids

Sequence
(BLAST)

001: MAGYPPGSGY PPYGAPPGNP YGAPPSYGVA QPPYASTLPY GAPAPTPSAP PAEVKPPKEG KAQGYGGYGQ PSGYYGHPPL AASAPPPPLG SYGAGPFAAL
101: LPSVFPPGTD PNVVACFQAA DRDGSGFIDD KELQQALSSY NQSFSLRTVH LLMYLFTSSN VRKIGPKEFS AVFYSLQNWR AIFERFDRDR SGKIDTSELR
201: EALLSLGFVV SPTVLDLLVA KFDKSGGKSK AIEYDNFIEC CLTVKGLTEK FKEKDTQYSG SATFTYESFM LTVLPFLIA

Best Arabidopsis Sequence Match ( AT3G10300.3 )
(BLAST)

001: MSGYPPSSQG YGYGGNPPPP QPPYGSTGNN PPPYGSSGSN PPPPYGSSAS SPYAVPYGAQ PAPYGAPPSA PYASLPGDHN KPHKEKPHGA SYGSPSPGGY
101: GAHPSSGPSD YGGYGGAPQQ SGHGGGYGGA PQQSGHGGGY GAPPPQASYG SPFASLVPSA FPPGTDPNIV ACFQAADRDN SGFIDDKELQ GALSSYNQSF
201: SIRTVHLLMY LFTNSNVRKI GPKEFTSLFF SLQNWRSIFE RFDKDRSGRI DTNELRDALM SLGFSVSPVI LDLLVSKFDK SGGRNRAIEY DNFIECCLTV
301: KGLTEKFKEK DTALSGSAIF NYENFMLTVL PFLVA

Arabidopsis Description

Calcium-binding EF-hand family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.