Factsheet for TraesCS4B01G132800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G186100.1	Wheat	golgi	98.48	99.38
TraesCS4D01G127600.1	Wheat	cytosol	97.87	99.38
Zm00001d052458_P001	Maize	extracellular	68.9	76.35
EES09228	Sorghum	cytosol	69.21	74.67
GSMUA_AchrUn_...	Banana	cytosol	39.94	73.18
TraesCS5B01G135100.1	Wheat	cytosol, nucleus, plastid	66.46	71.95
Solyc04g016400.2.1	Tomato	cytosol	50.91	69.01
CDY56710	Canola	cytosol, extracellular, plastid	58.23	67.49
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	56.4	66.31
KRH33201	Soybean	endoplasmic reticulum	57.01	65.85
PGSC0003DMT400033117	Potato	cytosol	50.61	64.59
HORVU4Hr1G026030.9	Barley	cytosol	64.33	64.53
VIT_00s0252g00130.t01	Wine grape	cytosol, plasma membrane, plastid	53.35	63.41
CDY41334	Canola	cytosol	60.06	61.56
Bra034103.1-P	Field mustard	cytosol	59.76	61.44
Solyc10g079890.1.1	Tomato	plastid	60.37	58.24
PGSC0003DMT400076703	Potato	cytosol, plastid	60.67	57.85
CDY67472	Canola	cytosol	52.44	57.33
AT5G04170.1	Thale cress	cytosol	57.01	52.82
CDX70254	Canola	cytosol	58.23	52.33
Bra009480.1-P	Field mustard	cytosol	56.4	50.68
CDY41394	Canola	mitochondrion	58.54	47.52
CDX80907	Canola	cytosol	56.4	45.79
AT3G10300.6	Thale cress	cytosol	50.91	44.3
KRH72037	Soybean	cytosol, plasma membrane, plastid	33.84	42.86
Bra005797.1-P	Field mustard	cytosol	53.66	42.82
TraesCS7B01G035100.1	Wheat	cytosol	35.06	42.44

Protein Annotations

EnsemblPlants:TraesCS4B01G132800.1	EnsemblPlantsGene:TraesCS4B01G132800	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10183	PANTHER:PTHR10183:SF372
PFAM:PF13202	PFscan:PS50222	ScanProsite:PS00018	SEG:seg	SMART:SM00054	SUPFAM:SSF47473
TIGR:cd16180	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:172520913..172524089

Molecular Weight (calculated)

34020.5 Da

IEP (calculated)

6.777

GRAVY (calculated)

-0.520

Length

328 amino acids

Sequence
(BLAST)

001: MAGYPPPPGS GYPYGAAGGY GAPPPSGQKP PKEGKTSSSS GPDPYHGAPP PQQPYGGGGG GGYGAPPSYG QKPPKEGKTS YSSGSDPYHG APPPQQPYGG
101: GGGGGGGYGQ QPYGAQPPSS AAPYGGPPAA QPYAGGGAGG YGSPFAALVP STFPPGTDPN VVACFQAADR DGSGMIDDKE LQSALSGFSS QSFSLRTVHL
201: LMYLFTNTNV RKIGPKEFTS VFYSLQNWRG IFERFDRDRS GRIDAPELRD ALLDLGYSVS PTVLDLLVSK FDKTGGKNKA VEYDNFIECC LTVKGLTEKF
301: KEKDTAYSGS ATFGYEAFML TVLPFLIA

Best Arabidopsis Sequence Match ( AT5G04170.1 )
(BLAST)

001: MSGYPPTSQG YGYGYGGGNQ PPPPQPPYSS GGNNPPYGSS TTSSPYAVPY GASKPQSSSS SAPTYGSSSY GAPPPSAPYA PSPGDYNKPP KEKPYGGGYG
101: APPPSGSSDY GSYGAGPRPS QPSGHGGGYG ATPPHGVSDY GSYGGAPPRP ASSGHGGGYG GYPPQASYGS PFASLIPSGF APGTDPNIVA CFQAADQDGS
201: GFIDDKELQG ALSSYQQRFS MRTVHLLMYL FTNSNAMKIG PKEFTALFYS LQNWRSIFER SDKDRSGRID VNELRDALLS LGFSVSPVVL DLLVSKFDKS
301: GGKNRAIEYD NFIECCLTVK GLTEKFKEKD TAYSGSATFN YESFMLTVLP FLIA

Arabidopsis Description

CML50Probable calcium-binding protein CML50 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.