Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G134000.1 | Wheat | cytosol | 77.86 | 82.1 |
| TraesCS7D01G133400.1 | Wheat | cytosol | 74.54 | 77.99 |
| Os08t0558100-01 | Rice | cytosol | 64.94 | 69.57 |
| HORVU7Hr1G027810.6 | Barley | cytosol | 63.47 | 63.47 |
| Zm00001d049940_P002 | Maize | cytosol | 59.04 | 62.26 |
| EES14088 | Sorghum | cytosol | 60.89 | 61.11 |
| GSMUA_Achr3P22660_001 | Banana | plastid | 52.77 | 60.59 |
| VIT_06s0080g00450.t01 | Wine grape | plastid | 46.49 | 56.0 |
| KRH26648 | Soybean | cytosol, plastid | 41.7 | 53.05 |
| KRH22671 | Soybean | cytosol, plastid | 41.7 | 51.83 |
| Solyc11g068460.1.1 | Tomato | cytosol, plastid | 44.65 | 48.59 |
| CDY31179 | Canola | cytosol | 35.06 | 42.6 |
| CDX83268 | Canola | cytosol | 35.06 | 42.6 |
| Bra000510.1-P | Field mustard | cytosol | 35.06 | 42.6 |
| AT2G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 35.79 | 42.54 |
| TraesCS5B01G135100.1 | Wheat | cytosol, nucleus, plastid | 41.33 | 36.96 |
| TraesCS4B01G132800.1 | Wheat | nucleus | 42.44 | 35.06 |
| PGSC0003DMT400067730 | Potato | cytosol, plastid | 36.16 | 33.79 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G035100.1 | EnsemblPlantsGene:TraesCS7B01G035100 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR10183 | PANTHER:PTHR10183:SF372 |
| PFAM:PF13405 | PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 | SUPFAM:SSF47473 |
| TIGR:cd16180 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:34310629..34312241
Molecular Weight (calculated)
28968.6 Da
IEP (calculated)
5.276
GRAVY (calculated)
-0.407
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MADYSRYGHG QGYAPSSSSP YGNGQGYGQG NGYAPSSSSP YGNGQGYGQG NGYAPSAPPA PTPSSSPYGY SYGYGQGGYP PPMGGGFGGA VAFPPGTHPD
101: VERAFRAVDR DGSGSIDEGE LQAALSDAYH RFSIRTVRLL MFLFSNAQLA SPRSRMGPAE FVTLWNCLGQ WRVVFDRYDR DCSGKIDSDE LREALRGLGY
201: AVPPSVIDLL IANYNNGVSH RGALDFDNFV ECGMVVKGLT EKFKENDTRY TGSAALTYDG FLSMVVPFIV P
101: VERAFRAVDR DGSGSIDEGE LQAALSDAYH RFSIRTVRLL MFLFSNAQLA SPRSRMGPAE FVTLWNCLGQ WRVVFDRYDR DCSGKIDSDE LREALRGLGY
201: AVPPSVIDLL IANYNNGVSH RGALDFDNFV ECGMVVKGLT EKFKENDTRY TGSAALTYDG FLSMVVPFIV P
001: MSYSNAYAPS APELPESFVQ QQHDGESRYT YAYPSYQPTQ QFSSYSGMFS PETHPEIVRS FESADRNRSG FLEESELRQA LSLSGYDGIS NRTIRLLLFI
101: YKIPVDSLLR LGPKEYVELW NCLAQWRAIF NRYDRDRSGK MNSTQLRDAF YNLGCVLPTS VHQLIVSQFD DGTGKTVDLC FDSFLECGMI VKGLTEKFRE
201: NDPGYTGYAT LSYDVFMLMV IPFIATYD
101: YKIPVDSLLR LGPKEYVELW NCLAQWRAIF NRYDRDRSGK MNSTQLRDAF YNLGCVLPTS VHQLIVSQFD DGTGKTVDLC FDSFLECGMI VKGLTEKFRE
201: NDPGYTGYAT LSYDVFMLMV IPFIATYD
Arabidopsis Description
CML48Probable calcium-binding protein CML48 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQH1]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.