CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 2
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91248
EER99634
OQU79433
OQU92347

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27480.1	EER91248	AT1G49840.1	21798944
AT2G27480.1	EER99634	AT1G49840.1	21798944
AT2G27480.1	OQU79433	AT1G49840.1	21798944
AT2G27480.1	OQU92347	AT1G49840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049940_P002	Maize	cytosol	78.52	82.49
Os08t0558100-01	Rice	cytosol	64.44	68.77
TraesCS7D01G133400.1	Wheat	cytosol	65.93	68.73
TraesCS7A01G134000.1	Wheat	cytosol	62.59	65.76
GSMUA_Achr3P22660_001	Banana	plastid	53.7	61.44
TraesCS7B01G035100.1	Wheat	cytosol	61.11	60.89
HORVU7Hr1G027810.6	Barley	cytosol	59.26	59.04
VIT_06s0080g00450.t01	Wine grape	plastid	48.52	58.22
KRH26648	Soybean	cytosol, plastid	42.59	53.99
KRH22671	Soybean	cytosol, plastid	42.96	53.21
Solyc11g068460.1.1	Tomato	cytosol, plastid	48.15	52.21
CDY31179	Canola	cytosol	37.41	45.29
CDX83268	Canola	cytosol	37.41	45.29
AT2G27480.1	Thale cress	cytosol, nucleus, peroxisome	37.78	44.74
Bra000510.1-P	Field mustard	cytosol	36.67	44.39
PGSC0003DMT400067730	Potato	cytosol, plastid	40.37	37.59
EES09228	Sorghum	cytosol	41.11	36.51

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	EntrezGene:8057982	UniProt:C5YN75	EnsemblPlants:EES14088	ProteinID:EES14088
ProteinID:EES14088.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0004198	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538
InterPro:IPR002048	PFAM:PF13202	PFAM:PF13405	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR10183
PANTHER:PTHR10183:SF372	SMART:SM00054	EnsemblPlantsGene:SORBI_3007G169200	SUPFAM:SSF47473	UniParc:UPI0001A87BCF	RefSeq:XP_002444593.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:60387776..60390701

Molecular Weight (calculated)

28895.7 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.336

Length

270 amino acids

Sequence
(BLAST)

001: MADYNRYGHS YSYGGGGGYG QGPPPSAPPA PHMPTTTTTT SAAPPSSSSS FSYGGYPPPP AAAYPPPPAQ AAASGFGSGY GYGSGFVPVA FPPGTHPEVE
101: RAFRSADRDC SGAIDERELQ GALSSAYHRF SIRTVRLLMF LFNDASSSSS TPSRMGPTQF VSLWNCLGQW RGIFDRYDRD RSGKIDSREL TEALRSLGYA
201: VPPSVIELLI ANYNNGVPSN GALDFDNFVE CGMIVKGLTE KFKEKDTRYT GSATLTYDGF LSMVIPFIVP

Best Arabidopsis Sequence Match ( AT5G04170.1 )
(BLAST)

001: MSGYPPTSQG YGYGYGGGNQ PPPPQPPYSS GGNNPPYGSS TTSSPYAVPY GASKPQSSSS SAPTYGSSSY GAPPPSAPYA PSPGDYNKPP KEKPYGGGYG
101: APPPSGSSDY GSYGAGPRPS QPSGHGGGYG ATPPHGVSDY GSYGGAPPRP ASSGHGGGYG GYPPQASYGS PFASLIPSGF APGTDPNIVA CFQAADQDGS
201: GFIDDKELQG ALSSYQQRFS MRTVHLLMYL FTNSNAMKIG PKEFTALFYS LQNWRSIFER SDKDRSGRID VNELRDALLS LGFSVSPVVL DLLVSKFDKS
301: GGKNRAIEYD NFIECCLTVK GLTEKFKEKD TAYSGSATFN YESFMLTVLP FLIA

Arabidopsis Description

CML50Probable calcium-binding protein CML50 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.