Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra014219.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27480.1 | Bra014219.1-P | AT1G49840.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83268 | Canola | cytosol | 97.76 | 97.76 |
| AT2G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 73.99 | 72.37 |
| KRH26648 | Soybean | cytosol, plastid | 49.78 | 52.11 |
| KRH22671 | Soybean | cytosol, plastid | 49.33 | 50.46 |
| VIT_06s0080g00450.t01 | Wine grape | plastid | 47.98 | 47.56 |
| Solyc11g068460.1.1 | Tomato | cytosol, plastid | 48.43 | 43.37 |
| GSMUA_Achr3P22660_001 | Banana | plastid | 43.95 | 41.53 |
| Os08t0558100-01 | Rice | cytosol | 45.74 | 40.32 |
| TraesCS7A01G134000.1 | Wheat | cytosol | 44.39 | 38.52 |
| TraesCS7D01G133400.1 | Wheat | cytosol | 44.39 | 38.22 |
| Zm00001d049940_P002 | Maize | cytosol | 43.95 | 38.13 |
| EES14088 | Sorghum | cytosol | 44.39 | 36.67 |
| HORVU7Hr1G027810.6 | Barley | cytosol | 44.39 | 36.53 |
| TraesCS7B01G035100.1 | Wheat | cytosol | 42.6 | 35.06 |
| PGSC0003DMT400067730 | Potato | cytosol, plastid | 39.01 | 30.0 |
| Bra034103.1-P | Field mustard | cytosol | 36.77 | 25.71 |
| Bra009480.1-P | Field mustard | cytosol | 37.22 | 22.74 |
| Bra005797.1-P | Field mustard | cytosol | 37.67 | 20.44 |
Protein Annotations
| EnsemblPlants:Bra000510.1 | EnsemblPlants:Bra000510.1-P | EnsemblPlantsGene:Bra000510 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR10183 |
| PANTHER:PTHR10183:SF372 | PFscan:PS50222 | ScanProsite:PS00018 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI0002540029 |
| UniProt:M4C8I2 | MapMan:35.1 | : | : | : | : |
Description
AT2G27480 (E=2e-099) | calcium ion binding
Coordinates
chrA03:-:11505145..11506154
Molecular Weight (calculated)
25432.9 Da
IEP (calculated)
4.620
GRAVY (calculated)
-0.361
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYAPSAPEL PESFRQQVDE EARYTYAYPY GQPTNQLGSS GMFSPETHPD IVRSFESAGG NRSGFLDESE LRHALSFSGY EGISNRTIRF LLFIYKSPAE
101: SLLRLGPKEY AELWNCLAQW RAMFDRYDRD RSGRMNALEL RDAFYHLGYM LPSSVLQLII LSQFDDGTGN TVDLCFDRFL ECGMTVKSLT EKFKEKDPGY
201: TGYATLSYDA FMSMVIPFIA SYD
101: SLLRLGPKEY AELWNCLAQW RAMFDRYDRD RSGRMNALEL RDAFYHLGYM LPSSVLQLII LSQFDDGTGN TVDLCFDRFL ECGMTVKSLT EKFKEKDPGY
201: TGYATLSYDA FMSMVIPFIA SYD
001: MSYSNAYAPS APELPESFVQ QQHDGESRYT YAYPSYQPTQ QFSSYSGMFS PETHPEIVRS FESADRNRSG FLEESELRQA LSLSGYDGIS NRTIRLLLFI
101: YKIPVDSLLR LGPKEYVELW NCLAQWRAIF NRYDRDRSGK MNSTQLRDAF YNLGCVLPTS VHQLIVSQFD DGTGKTVDLC FDSFLECGMI VKGLTEKFRE
201: NDPGYTGYAT LSYDVFMLMV IPFIATYD
101: YKIPVDSLLR LGPKEYVELW NCLAQWRAIF NRYDRDRSGK MNSTQLRDAF YNLGCVLPTS VHQLIVSQFD DGTGKTVDLC FDSFLECGMI VKGLTEKFRE
201: NDPGYTGYAT LSYDVFMLMV IPFIATYD
Arabidopsis Description
CML48Probable calcium-binding protein CML48 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQH1]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.