Factsheet for Bra014219.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012296.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49840.1	Bra012296.1-P	AT1G21840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16530	Canola	plastid	92.01	99.34
AT1G49840.1	Thale cress	plastid	81.56	80.57
Bra038214.1-P	Field mustard	mitochondrion, plastid	71.31	75.82
Bra022430.1-P	Field mustard	mitochondrion, plastid	72.13	75.05
PGSC0003DMT400066530	Potato	plastid	68.24	70.85
VIT_03s0091g00410.t01	Wine grape	plastid	68.85	70.74
Solyc01g107350.2.1	Tomato	plastid	68.03	70.64
KRH35700	Soybean	plastid	66.6	70.35
KRG91072	Soybean	plastid	66.6	70.19
Os12t0581300-01	Rice	cytosol	21.52	66.46
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	41.6	66.12
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	61.48	65.5
GSMUA_Achr4P32590_001	Banana	cytosol	60.45	65.27
GSMUA_Achr6P16820_001	Banana	cytosol	57.79	63.95
GSMUA_Achr10P...	Banana	plastid	54.3	63.25
OQU79433	Sorghum	cytosol	57.38	62.36
GSMUA_Achr10P...	Banana	cytosol	49.39	61.95
Os03t0606100-01	Rice	cytosol	55.74	61.82
GSMUA_Achr6P24020_001	Banana	cytosol	50.61	61.6
TraesCS4D01G076200.1	Wheat	cytosol, mitochondrion	57.58	61.49
TraesCS4A01G237300.1	Wheat	cytosol, mitochondrion	57.38	61.27
TraesCS4B01G077800.1	Wheat	cytosol	57.38	61.27
TraesCS5B01G078600.2	Wheat	cytosol	53.89	61.16
GSMUA_Achr2P21540_001	Banana	plastid	54.71	61.1
HORVU5Hr1G018870.3	Barley	cytosol, mitochondrion	57.58	61.09
TraesCS5A01G072300.1	Wheat	cytosol	57.17	60.26
TraesCS5D01G085100.1	Wheat	cytosol	57.17	60.26
GSMUA_Achr7P00620_001	Banana	mitochondrion	50.0	59.95
TraesCS2D01G192800.1	Wheat	nucleus	61.48	59.29
EER91248	Sorghum	cytosol	56.56	59.1
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	57.99	58.96
TraesCS2B01G211900.1	Wheat	nucleus	61.48	58.94
TraesCS2A01G194900.1	Wheat	nucleus	61.27	58.86
Os07t0591100-01	Rice	nucleus	61.89	58.3
GSMUA_Achr2P13470_001	Banana	cytosol	52.05	57.86
Zm00001d013746_P001	Maize	cytosol	54.71	57.67
OQU92347	Sorghum	mitochondrion, plastid	57.38	57.49
EER99634	Sorghum	nucleus	61.48	57.47
Zm00001d030837_P001	Maize	cytosol, mitochondrion	55.74	56.9
Zm00001d047324_P001	Maize	cytosol	56.97	56.73
Zm00001d006749_P001	Maize	cytosol	60.04	55.7
Zm00001d016585_P002	Maize	extracellular, plasma membrane	28.28	54.55
Zm00001d022006_P001	Maize	cytosol, plastid	61.48	53.86
HORVU4Hr1G013190.8	Barley	mitochondrion	53.69	51.88
Bra010924.1-P	Field mustard	mitochondrion, plastid	52.66	48.13
Bra023074.1-P	Field mustard	plastid	31.35	45.0
Bra035117.1-P	Field mustard	mitochondrion	36.89	43.17
Bra012096.1-P	Field mustard	cytosol	32.58	43.09
Bra005901.1-P	Field mustard	cytosol	31.56	41.85
Bra007185.1-P	Field mustard	cytosol, nucleus, plastid	34.84	39.17
Bra009139.1-P	Field mustard	cytosol	35.25	38.74
Bra014725.1-P	Field mustard	nucleus	34.02	38.6
Bra008179.1-P	Field mustard	cytosol	30.33	37.37
Bra003768.1-P	Field mustard	cytosol	29.51	36.36
Bra031821.1-P	Field mustard	cytosol	31.76	20.69

Protein Annotations

EnsemblPlants:Bra014219.1	EnsemblPlants:Bra014219.1-P	EnsemblPlantsGene:Bra014219	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF1
PFAM:PF04788	SEG:seg	UniParc:UPI0002546350	UniProt:M4DCK3	MapMan:27.4.5.3	:

Description

AT1G49840 (E=8e-196) | unknown protein

Coordinates

chrA08:-:2430975..2432583

Molecular Weight (calculated)

53796.1 Da

IEP (calculated)

9.886

GRAVY (calculated)

-0.424

Length

488 amino acids

Sequence
(BLAST)

001: MEMEKKQGFF SALRDEVIRS FTPSRSRPRS RSASPSRSNS HMKALLWGRK KLLASSGCSR TAAGGYHLAS QPEPLIGRSE SLRPVIEGPD PDNDETQTDS
101: KRIGSGLGHW VKGQMSRAPS VASTRSDLRL LLGVLGAPLA PIKVSSSIRD SPIVKSLNIT FRFVPETSTA QYILQQYTAA SGGQKLQSSV KNAYANGKVK
201: MITSELETPT RTVRNRNPTK PETGGFVLWQ MNPDMWYVEL SVGSSKVRAG CNGKLVWRHT PWLGSHTANG PVRPLRRALQ GLDPRTTAAI FAESKCVGEK
301: KVNGEDCFIL KLCTDPGTLK ARSEGPAEIV RHILFGYFSQ RTGLLVQFED SQLTRIQSNS GDAVYWETTI NSSLEDYRQV EGIMIAHSGR SVVTLFRFGE
401: VAMSHTRTKM EERWTIEEVA FNVPGLSPDC FIPPADLRSS SLLTEACEYS DREEKGKSSI MLAAHRAKVA ALEKGNLGND HPVWQIDV

Best Arabidopsis Sequence Match ( AT1G49840.1 )
(BLAST)

001: MEKKQGFFSS LRDEVVRGLS PSRSRPRSRS ASPSRSTTPH MKALLWGRKK LIASSGCSGG GGVIGGERGG YYLSQPEPFI GRSSSLRPVM EGPDPDNGEV
101: SGVDSKRLGS GLSHWVKGQW SRAPSVTSTT PAYRKSDLRL LLGVMGAPLA PINVSSSSHL LHLTIRDSPT ETSSAQYILQ QYTAACGGHK LHNAIKNAYA
201: MGKLKMITSE LETPTGTVRN RNSTKSETGG FVLWQMNPDM WYVELSVGGS KVRAGCNGKL VWRHTPWLGS HTAKGPVRPL RRALQGLDPR TTATMFAESK
301: CVGERKVNGE DCFILKLCTD PETLRARSEG PAEIVRHILF GYFSQRTGLL AQIEDSQLTR IQSNDGDAVY WETTINSSLD DYKQVEGIMI AHSGRSVVTL
401: FRFGEVAMSH TRTKMEERWT IEEVAFNVPG LSLDCFIPPA DLRSGSLTEA CEYSGQEEKG KSSLALASTT AHRAKVAALE KGSFDNDPVW HIDV

Arabidopsis Description

Glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620) [Source:UniProtKB/TrEMBL;Acc:Q9C6D0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.