Factsheet for Bra009139.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98870	Canola	cytosol	99.55	99.55
CDX70123	Canola	cytosol	99.32	99.55
AT5G05840.1	Thale cress	cytosol	94.14	95.22
VIT_13s0019g03180.t01	Wine grape	cytosol	65.77	68.54
KRG97798	Soybean	cytosol	65.09	65.83
KRH31070	Soybean	cytosol	64.64	65.83
PGSC0003DMT400059652	Potato	cytosol	61.26	64.92
KRH73113	Soybean	cytosol	61.71	64.62
Solyc03g078650.2.1	Tomato	cytosol, nucleus, plastid	61.04	64.52
KRH15018	Soybean	cytosol	60.81	63.23
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	53.38	62.53
PGSC0003DMT400069768	Potato	cytosol	28.15	62.19
PGSC0003DMT400069765	Potato	cytosol	61.71	61.71
GSMUA_Achr5P28960_001	Banana	cytosol	60.14	61.24
Solyc05g052860.2.1	Tomato	cytosol	60.81	60.95
GSMUA_Achr6P33890_001	Banana	cytosol	50.0	57.96
Os03t0267500-01	Rice	plasma membrane	54.5	54.88
TraesCS4A01G093200.1	Wheat	cytosol, nucleus, plastid	55.18	54.81
TraesCS4B01G211300.1	Wheat	cytosol, nucleus, plastid	54.95	54.71
EER95119	Sorghum	cytosol	54.5	54.63
TraesCS4D01G211900.1	Wheat	cytosol, nucleus, plastid	54.95	54.22
Bra012096.1-P	Field mustard	cytosol	44.82	53.93
Bra007185.1-P	Field mustard	cytosol, nucleus, plastid	52.7	53.92
Zm00001d028565_P002	Maize	cytosol	54.73	52.83
Bra014725.1-P	Field mustard	nucleus	50.68	52.33
Zm00001d047840_P001	Maize	cytosol, peroxisome, plastid	53.38	52.09
Bra023074.1-P	Field mustard	plastid	39.86	52.06
Bra008179.1-P	Field mustard	cytosol	44.37	49.75
HORVU4Hr1G060590.5	Barley	mitochondrion	55.18	49.0
Bra003768.1-P	Field mustard	cytosol	43.69	48.99
Bra038214.1-P	Field mustard	mitochondrion, plastid	40.32	39.0
Bra022430.1-P	Field mustard	mitochondrion, plastid	39.64	37.53
Bra005901.1-P	Field mustard	cytosol	31.08	37.5
Bra035117.1-P	Field mustard	mitochondrion	34.46	36.69
Bra014219.1-P	Field mustard	plastid	38.74	35.25
Bra010924.1-P	Field mustard	mitochondrion, plastid	38.29	31.84
Bra031821.1-P	Field mustard	cytosol	43.92	26.03

Protein Annotations

EnsemblPlants:Bra009139.1	EnsemblPlants:Bra009139.1-P	EnsemblPlantsGene:Bra009139	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF2
PFAM:PF04788	SEG:seg	UniParc:UPI0002544C5B	UniProt:M4CY42	MapMan:27.4.5.3	:

Description

AT5G05840 (E=1e-235) | unknown protein

Coordinates

chrA10:-:15389350..15391707

Molecular Weight (calculated)

49772.2 Da

IEP (calculated)

4.730

GRAVY (calculated)

-0.437

Length

444 amino acids

Sequence
(BLAST)

001: MRKLCPNYNL EDGLETVLEV PMPEELFSAS KTKPGWNQMK SFWSKPTATA TATNMTRLFG GRNAEIQLLL GVVGAPLIPL PVQPDHHNDY ENPIHKDIKD
101: QPLEMSMAQY IVKQYIAAVG GERALNAIES MYAMGKVRMT ASEFCTGEGS LNSKMVKARS IRSGGGEVGG FVLWQKGIEL WCLELVVSGC KISAGSDAKV
201: AWRQTPWHPS HASRGPPRPL RRFLQGLDPK STANLFARSS CMGEKKINDE DCFILKLEAE PSTLKARSSS NVEIIRHTVW GCFSQRTGLL IQLEDSHLLR
301: IKAQDDNSIF WETTMESLIQ DYRIIDGVQV AHAGKSSVSL FRFGENSDNH SRTRMEETWE IEEMDFNIKG LCMDCFLPPS DLKKDDDEEE EEEEEVEVEC
401: GLAANNEKLP MKIRSASLRI SSSKVLAIVE EEDESDVTEE MEET

Best Arabidopsis Sequence Match ( AT5G05840.1 )
(BLAST)

001: MRKLCPNYNL EDGLETVLEV PMPEELFAAS KTKPGWNQMK SYWSKPTATA TGTATATNMT RLFGGRNAEI QLLLGVVGAP LIPLPVQPDH HNDYENPIHK
101: DIKDQPLEMS MAQYIVKQYI AAVGGDRALN AVESMYAMGK VRMTASEFCT GEGSLNSKMV KARSIKSGGG EVGGFVLWQK GIELWCLELV VSGCKISAGS
201: DAKVAWRQTP WHPSHASRGP PRPLRRFLQG LDPKSTANLF ARSVCMGEKK INDEDCFILK LDAEPSALKA RSSSNVEIIR HTVWGCFSQR TGLLIQLEDS
301: HLLRIKAQDD NSIFWETTME SLIQDYRTVD GILVAHAGKS SVSLFRFGEN SDNHSRTRME ETWEIEEMDF NIKGLSMDCF LPPSDLKKDD DEEEEIECGL
401: AANNEKLPMK IRSASLRISS SKVLAIVEEE DESEVTEET

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FFJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.