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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plasma membrane 1
  • cytosol 2
  • plastid 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
EpiLoc:plasma membrane
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc03g078650.2.1 Tomato cytosol, nucleus, plastid 98.81 98.57
PGSC0003DMT400069765 Potato cytosol 77.33 72.97
PGSC0003DMT400069768 Potato cytosol 34.13 71.14
VIT_13s0019g03180.t01 Wine grape cytosol 71.36 70.19
GSMUA_Achr11P... Banana cytosol, nucleus, plastid 58.95 65.17
KRH31070 Soybean cytosol 64.92 62.39
KRG97798 Soybean cytosol 64.92 61.96
KRH15018 Soybean cytosol 63.01 61.83
CDX98870 Canola cytosol 65.16 61.49
AT5G05840.1 Thale cress cytosol 64.2 61.28
Bra009139.1-P Field mustard cytosol 64.92 61.26
CDX70123 Canola cytosol 64.68 61.17
KRH73113 Soybean cytosol 61.81 61.08
GSMUA_Achr5P28960_001 Banana cytosol 63.25 60.78
GSMUA_Achr6P33890_001 Banana cytosol 52.03 56.92
Os03t0267500-01 Rice plasma membrane 58.23 55.33
EER95119 Sorghum cytosol 58.47 55.3
TraesCS4A01G093200.1 Wheat cytosol, nucleus, plastid 58.47 54.81
TraesCS4B01G211300.1 Wheat cytosol, nucleus, plastid 58.23 54.71
AT3G55720.1 Thale cress nucleus 56.8 54.34
TraesCS4D01G211900.1 Wheat cytosol, nucleus, plastid 58.23 54.22
PGSC0003DMT400036213 Potato cytosol 32.7 53.94
Zm00001d028565_P002 Maize cytosol 58.95 53.7
CDY27272 Canola cytosol, nucleus, plastid 54.89 53.0
Bra007185.1-P Field mustard cytosol, nucleus, plastid 54.89 53.0
PGSC0003DMT400038589 Potato cytosol, nucleus, peroxisome 46.3 52.01
Zm00001d047840_P001 Maize cytosol, peroxisome, plastid 56.32 51.87
Bra014725.1-P Field mustard nucleus 52.98 51.63
CDX76076 Canola cytosol, nucleus, plastid 49.64 51.49
CDY02955 Canola cytosol, nucleus, plastid 49.64 51.49
PGSC0003DMT400013218 Potato cytosol 46.3 50.13
HORVU4Hr1G060590.5 Barley mitochondrion 58.0 48.6
PGSC0003DMT400066079 Potato cytosol 36.04 42.9
PGSC0003DMT400066530 Potato plastid 43.2 38.51
PGSC0003DMT400055468 Potato plastid 42.96 38.3
Protein Annotations
EnsemblPlants:PGSC0003DMT400059652EnsemblPlantsGene:PGSC0003DMG400023185EntrezGene:102588896InterPro:DUF620PANTHER:PTHR31300PANTHER:PTHR31300:SF2
PFAM:PF04788PGSC:PGSC0003DMG400023185RefSeq:XP_006367214.1SEG:segUniParc:UPI00029566FDUniProt:M1C4J2
MapMan:27.4.5.3:::::
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400023185]
Coordinates
chr3:+:32979550..32982451
Molecular Weight (calculated)
46851.9 Da
IEP (calculated)
6.515
GRAVY (calculated)
-0.431
Length
419 amino acids
Sequence
(BLAST)
001: MRTLCPNLDR EDGLETVLEV PIPEEMFASP KHRTRHNMKY HTDEKSAASV FGSRDAEIQL LLGVVGAPLI PHPIRYQHSI NTKINDHPIE ASMAKYIVQQ
101: YIAAAGGEGA LNSIDSMYAM GKIKMVASEF SAGDGMGLNK GNMMKIKSVK NGSGEMGGFV LWQKRPDLWS IELVVSGCKI SAGSDGKVAW RQTPWHHSHA
201: SRGPARPLRR SLQGLDPKSV ANLFSTSICI GEKTVNEEDC FVLKLEAEPS SLKARSSSKV EVMRHTVWGY FSQRTGLLFQ LEDTHLLRIK APGNDVFWET
301: TMESLILDYR TIDGVNIAHA GRTSVSLFRF GENTEGHTRT RMEEVWTIEE VDFNIKGLSA DCFLPPSDLM KEDEMGHDVN KKSRLGFKTP KIRSCRRSVS
401: KIMSIDEEDL EDYEADEES
Best Arabidopsis Sequence Match ( AT5G05840.1 )
(BLAST)
001: MRKLCPNYNL EDGLETVLEV PMPEELFAAS KTKPGWNQMK SYWSKPTATA TGTATATNMT RLFGGRNAEI QLLLGVVGAP LIPLPVQPDH HNDYENPIHK
101: DIKDQPLEMS MAQYIVKQYI AAVGGDRALN AVESMYAMGK VRMTASEFCT GEGSLNSKMV KARSIKSGGG EVGGFVLWQK GIELWCLELV VSGCKISAGS
201: DAKVAWRQTP WHPSHASRGP PRPLRRFLQG LDPKSTANLF ARSVCMGEKK INDEDCFILK LDAEPSALKA RSSSNVEIIR HTVWGCFSQR TGLLIQLEDS
301: HLLRIKAQDD NSIFWETTME SLIQDYRTVD GILVAHAGKS SVSLFRFGEN SDNHSRTRME ETWEIEEMDF NIKGLSMDCF LPPSDLKKDD DEEEEIECGL
401: AANNEKLPMK IRSASLRISS SKVLAIVEEE DESEVTEET
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FFJ4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.