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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • plasma membrane 1
  • plastid 2
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
EpiLoc:plasma membrane
MultiLoc:nucleus
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400059652 Potato cytosol 98.57 98.81
Solyc05g052860.2.1 Tomato cytosol 77.38 73.36
VIT_13s0019g03180.t01 Wine grape cytosol 70.95 69.95
GSMUA_Achr11P... Banana cytosol, nucleus, plastid 58.57 64.91
KRH31070 Soybean cytosol 65.0 62.61
KRG97798 Soybean cytosol 65.0 62.19
KRH15018 Soybean cytosol 62.62 61.59
AT5G05840.1 Thale cress cytosol 64.05 61.28
CDX98870 Canola cytosol 64.76 61.26
Bra009139.1-P Field mustard cytosol 64.52 61.04
CDX70123 Canola cytosol 64.29 60.95
KRH73113 Soybean cytosol 61.43 60.85
GSMUA_Achr5P28960_001 Banana cytosol 62.62 60.32
GSMUA_Achr6P33890_001 Banana cytosol 51.67 56.66
Os03t0267500-01 Rice plasma membrane 58.33 55.56
EER95119 Sorghum cytosol 58.33 55.3
TraesCS4A01G093200.1 Wheat cytosol, nucleus, plastid 58.57 55.03
TraesCS4B01G211300.1 Wheat cytosol, nucleus, plastid 58.33 54.93
AT3G55720.1 Thale cress nucleus 56.9 54.57
TraesCS4D01G211900.1 Wheat cytosol, nucleus, plastid 58.33 54.44
Zm00001d028565_P002 Maize cytosol 59.05 53.91
CDY27272 Canola cytosol, nucleus, plastid 55.0 53.23
Bra007185.1-P Field mustard cytosol, nucleus, plastid 55.0 53.23
Zm00001d047840_P001 Maize cytosol, peroxisome, plastid 56.19 51.87
Bra014725.1-P Field mustard nucleus 53.1 51.86
Solyc02g085490.1.1 Tomato cytosol, nucleus, peroxisome 45.95 51.74
CDX76076 Canola cytosol, nucleus, plastid 49.76 51.73
CDY02955 Canola cytosol, nucleus, plastid 49.76 51.73
Solyc07g022840.1.1 Tomato cytosol 45.0 50.67
Solyc04g080220.2.1 Tomato cytosol 45.48 49.35
HORVU4Hr1G060590.5 Barley mitochondrion 58.1 48.8
Solyc03g051920.2.1 Tomato cytosol 35.95 42.78
Solyc01g107350.2.1 Tomato plastid 42.86 38.3
Solyc04g078190.2.1 Tomato nucleus, plastid 22.14 31.74
Protein Annotations
EnsemblPlants:Solyc03g078650.2.1EnsemblPlantsGene:Solyc03g078650.2InterPro:DUF620PANTHER:PTHR31300PANTHER:PTHR31300:SF2PFAM:PF04788
SEG:segUniParc:UPI000276817FUniProt:K4BHU3MapMan:27.4.5.3::
Description
No Description!
Coordinates
chr3:+:51302671..51305251
Molecular Weight (calculated)
46886.0 Da
IEP (calculated)
6.454
GRAVY (calculated)
-0.442
Length
420 amino acids
Sequence
(BLAST)
001: MRTLCPNLDR EDGLETVLEV PIPEEMFASP KQRTRHNMKY HSDEKSAASV FGSRDAEIQL LLGVVGAPLI PHPIRYQHSI NTKINDHPIE ASMAKYIVQQ
101: YIAAAGGEGA LNSMDSMYAM GKIKMVASEF SAGDGMGLNK GNMMKIKSTV KNGSGEMGGF VLWQKRPDLW SIELVVSGCK ISAGSDGKVA WRQTPWHHSH
201: ASRGPARPLR RSLQGLDPKS VANLFSTSIC IGEKTVNEED CFVLKLEAEP SSLKARSSSK VEVMRHTVWG YFSQRTGLLF QLEDTHLLRI KAPGNDVFWE
301: TTMESLILDY RTIDGVNIAH AGRTSVSLFR FGENTEGHTR TRMEEVWTIE EVDFNIKGLS ADCFLPPSDL MKEDEMGHDV NKKSRLGLKT PKIRSCRRSA
401: SKIMSIDEED LEDYEADEES
Best Arabidopsis Sequence Match ( AT5G05840.1 )
(BLAST)
001: MRKLCPNYNL EDGLETVLEV PMPEELFAAS KTKPGWNQMK SYWSKPTATA TGTATATNMT RLFGGRNAEI QLLLGVVGAP LIPLPVQPDH HNDYENPIHK
101: DIKDQPLEMS MAQYIVKQYI AAVGGDRALN AVESMYAMGK VRMTASEFCT GEGSLNSKMV KARSIKSGGG EVGGFVLWQK GIELWCLELV VSGCKISAGS
201: DAKVAWRQTP WHPSHASRGP PRPLRRFLQG LDPKSTANLF ARSVCMGEKK INDEDCFILK LDAEPSALKA RSSSNVEIIR HTVWGCFSQR TGLLIQLEDS
301: HLLRIKAQDD NSIFWETTME SLIQDYRTVD GILVAHAGKS SVSLFRFGEN SDNHSRTRME ETWEIEEMDF NIKGLSMDCF LPPSDLKKDD DEEEEIECGL
401: AANNEKLPMK IRSASLRISS SKVLAIVEEE DESEVTEET
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FFJ4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.