Factsheet for Solyc04g078190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
cytosol 1
plasma membrane 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc04g078680.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g088740.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27690.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT1G27690.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT1G27690.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT1G27690.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT1G27690.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT1G27690.1	Solyc04g078680.2.1	AT5G42940.1	21798944
AT1G27690.1	Solyc12g088740.1.1	AT5G42940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055468	Potato	plastid	91.13	56.81
VIT_18s0001g09450.t01	Wine grape	plastid	71.33	44.56
Solyc01g107350.2.1	Tomato	plastid	71.33	44.47
KRH15430	Soybean	plastid	70.65	43.76
GSMUA_Achr10P...	Banana	plastid	62.12	43.44
KRH05611	Soybean	plastid	69.97	43.07
GSMUA_Achr10P...	Banana	cytosol	56.31	42.42
GSMUA_Achr2P21540_001	Banana	plastid	62.46	41.88
GSMUA_Achr6P16820_001	Banana	cytosol	62.12	41.27
GSMUA_Achr7P00620_001	Banana	mitochondrion	57.0	41.03
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	63.14	40.39
GSMUA_Achr2P13470_001	Banana	cytosol	60.41	40.32
AT1G27690.1	Thale cress	plastid	57.0	38.57
GSMUA_Achr6P24020_001	Banana	cytosol	52.22	38.15
GSMUA_Achr4P32590_001	Banana	cytosol	58.7	38.05
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	39.25	37.46
HORVU5Hr1G018870.3	Barley	cytosol, mitochondrion	57.0	36.3
TraesCS5A01G072300.1	Wheat	cytosol	57.34	36.29
TraesCS5D01G085100.1	Wheat	cytosol	57.0	36.07
Os07t0591100-01	Rice	nucleus	63.48	35.91
OQU92347	Sorghum	mitochondrion, plastid	59.39	35.73
TraesCS4B01G077800.1	Wheat	cytosol	55.63	35.67
TraesCS4A01G237300.1	Wheat	cytosol, mitochondrion	55.63	35.67
TraesCS4D01G076200.1	Wheat	cytosol, mitochondrion	55.63	35.67
TraesCS2D01G192800.1	Wheat	nucleus	61.43	35.57
TraesCS2A01G194900.1	Wheat	nucleus	61.43	35.43
Zm00001d047324_P001	Maize	cytosol	59.04	35.31
TraesCS2B01G211900.1	Wheat	nucleus	61.09	35.17
OQU79433	Sorghum	cytosol	53.58	34.97
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	57.0	34.79
EER99634	Sorghum	nucleus	61.77	34.67
EER91248	Sorghum	cytosol	54.95	34.48
Zm00001d030837_P001	Maize	cytosol, mitochondrion	55.97	34.31
Zm00001d006749_P001	Maize	cytosol	61.43	34.22
TraesCS5B01G078600.2	Wheat	cytosol	50.17	34.19
Os03t0606100-01	Rice	cytosol	51.19	34.09
Zm00001d013746_P001	Maize	cytosol	52.9	33.48
Zm00001d022006_P001	Maize	cytosol, plastid	62.12	32.67
Bra010924.1-P	Field mustard	mitochondrion, plastid	56.31	30.9
CDY67976	Canola	mitochondrion, plastid	50.85	29.39
CDX90103	Canola	mitochondrion, plastid	50.85	29.39
HORVU4Hr1G013190.8	Barley	mitochondrion	48.81	28.32
Solyc03g051920.2.1	Tomato	cytosol	29.35	24.36
Solyc02g085490.1.1	Tomato	cytosol, nucleus, peroxisome	28.33	22.25
Solyc03g078650.2.1	Tomato	cytosol, nucleus, plastid	31.74	22.14
Solyc05g052860.2.1	Tomato	cytosol	31.74	20.99
Solyc07g022840.1.1	Tomato	cytosol	26.62	20.91
Solyc04g080220.2.1	Tomato	cytosol	26.96	20.41
Os12t0581300-01	Rice	cytosol	3.41	6.33
Zm00001d016585_P002	Maize	extracellular, plasma membrane	5.46	6.32
CDY03939	Canola	cytosol	1.71	4.24

Protein Annotations

EnsemblPlants:Solyc04g078190.2.1	EnsemblPlantsGene:Solyc04g078190.2	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF7	PFAM:PF04788
SEG:seg	UniParc:UPI0002766A23	UniProt:K4BUQ6	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr4:-:62985515..62987765

Molecular Weight (calculated)

32041.9 Da

IEP (calculated)

10.572

GRAVY (calculated)

-0.294

Length

293 amino acids

Sequence
(BLAST)

001: MEKKQGFFSA LKDEVVRGLS PAKSRGRSPS PSGSGLLRRR KGNQAPQPEV YISRSGSLRP CVETLSPLME GPDPNGPEVG DSKSDRWWMK GQLCRAPSVS
101: TSGSGLQRSD LRLLLGVLGA PLAPVHVSNN DPLPHLSIKD TPIETSSAQY ILQQYTAASG GQKLQNTMYN AYAMGKVRMM ASDIETATKV IKNRNSSKTA
201: ESGGFVLWQM NPDMWYVELA LGSSKVHAGC NGKLVWRHTP WLGAHAAKGP VRPLRVLILE LLQTCLLVQN VLEKRRSTVR IASFSNFVLI HIL

Best Arabidopsis Sequence Match ( AT3G19540.1 )
(BLAST)

001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV

Arabidopsis Description

AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.