Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400069765 | Potato | cytosol | 94.58 | 94.37 |
| PGSC0003DMT400069768 | Potato | cytosol | 42.21 | 93.03 |
| Solyc03g078650.2.1 | Tomato | cytosol, nucleus, plastid | 73.36 | 77.38 |
| VIT_13s0019g03180.t01 | Wine grape | cytosol | 67.72 | 70.42 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 55.76 | 65.17 |
| KRH31070 | Soybean | cytosol | 61.63 | 62.61 |
| KRG97798 | Soybean | cytosol | 61.4 | 61.96 |
| KRH15018 | Soybean | cytosol | 59.14 | 61.36 |
| AT5G05840.1 | Thale cress | cytosol | 60.72 | 61.28 |
| CDX98870 | Canola | cytosol | 61.17 | 61.04 |
| CDX70123 | Canola | cytosol | 60.95 | 60.95 |
| Bra009139.1-P | Field mustard | cytosol | 60.95 | 60.81 |
| GSMUA_Achr5P28960_001 | Banana | cytosol | 59.82 | 60.78 |
| KRH73113 | Soybean | cytosol | 58.01 | 60.61 |
| GSMUA_Achr6P33890_001 | Banana | cytosol | 49.66 | 57.44 |
| Os03t0267500-01 | Rice | plasma membrane | 56.66 | 56.92 |
| EER95119 | Sorghum | cytosol | 55.76 | 55.76 |
| TraesCS4A01G093200.1 | Wheat | cytosol, nucleus, plastid | 55.76 | 55.26 |
| TraesCS4B01G211300.1 | Wheat | cytosol, nucleus, plastid | 55.53 | 55.16 |
| TraesCS4D01G211900.1 | Wheat | cytosol, nucleus, plastid | 55.53 | 54.67 |
| Zm00001d028565_P002 | Maize | cytosol | 56.21 | 54.13 |
| Zm00001d047840_P001 | Maize | cytosol, peroxisome, plastid | 53.72 | 52.31 |
| Solyc02g085490.1.1 | Tomato | cytosol, nucleus, peroxisome | 43.79 | 52.01 |
| Bra007185.1-P | Field mustard | cytosol, nucleus, plastid | 50.79 | 51.84 |
| CDY27272 | Canola | cytosol, nucleus, plastid | 50.79 | 51.84 |
| AT3G55720.1 | Thale cress | nucleus | 51.24 | 51.83 |
| Bra014725.1-P | Field mustard | nucleus | 49.66 | 51.16 |
| CDX76076 | Canola | cytosol, nucleus, plastid | 46.5 | 50.99 |
| CDY02955 | Canola | cytosol, nucleus, plastid | 46.5 | 50.99 |
| Solyc07g022840.1.1 | Tomato | cytosol | 42.89 | 50.94 |
| HORVU4Hr1G060590.5 | Barley | mitochondrion | 55.76 | 49.4 |
| Solyc04g080220.2.1 | Tomato | cytosol | 42.89 | 49.1 |
| Solyc03g051920.2.1 | Tomato | cytosol | 34.31 | 43.06 |
| Solyc01g107350.2.1 | Tomato | plastid | 42.21 | 39.79 |
| Solyc04g078190.2.1 | Tomato | nucleus, plastid | 20.99 | 31.74 |
Protein Annotations
| EnsemblPlants:Solyc05g052860.2.1 | EnsemblPlantsGene:Solyc05g052860.2 | InterPro:DUF620 | PANTHER:PTHR31300 | PANTHER:PTHR31300:SF2 | PFAM:PF04788 |
| SEG:seg | UniParc:UPI0002765F1E | UniProt:K4C1W6 | MapMan:27.4.5.3 | : | : |
Description
No Description!
Coordinates
chr5:+:63047282..63050700
Molecular Weight (calculated)
49411.6 Da
IEP (calculated)
6.511
GRAVY (calculated)
-0.479
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTLCPNLDN EDGLETVLEV PIPEEMFVNA SHKNNVKSWQ NMKSWIKSHS GNNNHHDNYY YKSSAVSVIG GRNAEIQLLL GVVAAPLIPH PIKCNNHSLN
101: KKINDHPIET SMAKYIVQQY IAAAGGEHAL NSINSMYAMG KVKMIASEFI EGDGLGLNSG KVMKIKTAKN GAGEMGGFVL WQKRPDLWSI ELVVSGCKIS
201: AGSDGKVSWR QTPWHHSHAS RGPARPLRRS LQGLDPRSTA DMFSDSICIG EKPVNGEDCF VLKFEAEPSS LKARSSSNVE IMRHTVWGYF SQRTGLLVQL
301: EDSHLLRLKS PKDDVFWETT MESLVQEYRT IDGVNIAHSG KTCVSLFRFG ENSEGHTRTR MEEVWTIEEV DFNIKGLSLD CFLPPSDMKK DDDQDIISDD
401: DDINKNSRIE PKNNVIHNAN NPKFITAIKG AAKIMAIDED SQD
101: KKINDHPIET SMAKYIVQQY IAAAGGEHAL NSINSMYAMG KVKMIASEFI EGDGLGLNSG KVMKIKTAKN GAGEMGGFVL WQKRPDLWSI ELVVSGCKIS
201: AGSDGKVSWR QTPWHHSHAS RGPARPLRRS LQGLDPRSTA DMFSDSICIG EKPVNGEDCF VLKFEAEPSS LKARSSSNVE IMRHTVWGYF SQRTGLLVQL
301: EDSHLLRLKS PKDDVFWETT MESLVQEYRT IDGVNIAHSG KTCVSLFRFG ENSEGHTRTR MEEVWTIEEV DFNIKGLSLD CFLPPSDMKK DDDQDIISDD
401: DDINKNSRIE PKNNVIHNAN NPKFITAIKG AAKIMAIDED SQD
001: MRKLCPNYNL EDGLETVLEV PMPEELFAAS KTKPGWNQMK SYWSKPTATA TGTATATNMT RLFGGRNAEI QLLLGVVGAP LIPLPVQPDH HNDYENPIHK
101: DIKDQPLEMS MAQYIVKQYI AAVGGDRALN AVESMYAMGK VRMTASEFCT GEGSLNSKMV KARSIKSGGG EVGGFVLWQK GIELWCLELV VSGCKISAGS
201: DAKVAWRQTP WHPSHASRGP PRPLRRFLQG LDPKSTANLF ARSVCMGEKK INDEDCFILK LDAEPSALKA RSSSNVEIIR HTVWGCFSQR TGLLIQLEDS
301: HLLRIKAQDD NSIFWETTME SLIQDYRTVD GILVAHAGKS SVSLFRFGEN SDNHSRTRME ETWEIEEMDF NIKGLSMDCF LPPSDLKKDD DEEEEIECGL
401: AANNEKLPMK IRSASLRISS SKVLAIVEEE DESEVTEET
101: DIKDQPLEMS MAQYIVKQYI AAVGGDRALN AVESMYAMGK VRMTASEFCT GEGSLNSKMV KARSIKSGGG EVGGFVLWQK GIELWCLELV VSGCKISAGS
201: DAKVAWRQTP WHPSHASRGP PRPLRRFLQG LDPKSTANLF ARSVCMGEKK INDEDCFILK LDAEPSALKA RSSSNVEIIR HTVWGCFSQR TGLLIQLEDS
301: HLLRIKAQDD NSIFWETTME SLIQDYRTVD GILVAHAGKS SVSLFRFGEN SDNHSRTRME ETWEIEEMDF NIKGLSMDCF LPPSDLKKDD DEEEEIECGL
401: AANNEKLPMK IRSASLRISS SKVLAIVEEE DESEVTEET
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FFJ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.