Factsheet for GSMUA_Achr5P28960_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	74.08	85.22
GSMUA_Achr6P33890_001	Banana	cytosol	71.1	80.94
EER95119	Sorghum	cytosol	66.74	65.69
Os03t0267500-01	Rice	plasma membrane	66.28	65.53
TraesCS4A01G093200.1	Wheat	cytosol, nucleus, plastid	66.97	65.32
TraesCS4B01G211300.1	Wheat	cytosol, nucleus, plastid	66.74	65.25
TraesCS4D01G211900.1	Wheat	cytosol, nucleus, plastid	67.2	65.11
VIT_13s0019g03180.t01	Wine grape	cytosol	63.53	65.02
Zm00001d028565_P002	Maize	cytosol	67.2	63.7
PGSC0003DMT400059652	Potato	cytosol	60.78	63.25
Solyc03g078650.2.1	Tomato	cytosol, nucleus, plastid	60.32	62.62
KRH31070	Soybean	cytosol	61.01	61.01
GSMUA_Achr4P27870_001	Banana	cytosol	52.98	60.79
Zm00001d047840_P001	Maize	cytosol, peroxisome, plastid	63.3	60.66
KRG97798	Soybean	cytosol	60.78	60.36
CDX70123	Canola	cytosol	61.24	60.27
AT5G05840.1	Thale cress	cytosol	60.55	60.14
Bra009139.1-P	Field mustard	cytosol	61.24	60.14
CDX98870	Canola	cytosol	61.01	59.91
KRH73113	Soybean	cytosol	58.26	59.91
Solyc05g052860.2.1	Tomato	cytosol	60.78	59.82
GSMUA_Achr2P13560_001	Banana	cytosol	51.61	59.68
PGSC0003DMT400069765	Potato	cytosol	60.55	59.46
PGSC0003DMT400069768	Potato	cytosol	27.29	59.2
KRH15018	Soybean	cytosol	57.57	58.78
HORVU4Hr1G060590.5	Barley	mitochondrion	66.74	58.2
AT3G55720.1	Thale cress	nucleus	49.08	48.86
Bra007185.1-P	Field mustard	cytosol, nucleus, plastid	48.39	48.62
CDY27272	Canola	cytosol, nucleus, plastid	48.39	48.62
Bra014725.1-P	Field mustard	nucleus	47.71	48.37
CDY02955	Canola	cytosol, nucleus, plastid	44.72	48.27
CDX76076	Canola	cytosol, nucleus, plastid	44.27	47.77
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	33.03	46.91
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	45.64	43.45
GSMUA_Achr10P...	Banana	cytosol	38.3	42.93
GSMUA_Achr3P29550_001	Banana	cytosol	34.4	42.13
GSMUA_Achr4P32590_001	Banana	cytosol	43.58	42.04
GSMUA_Achr6P24020_001	Banana	cytosol	38.53	41.9
GSMUA_Achr6P16820_001	Banana	cytosol	41.74	41.27
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	29.82	39.76
GSMUA_Achr9P25120_001	Banana	mitochondrion	30.5	39.47
GSMUA_Achr7P00620_001	Banana	mitochondrion	36.7	39.31
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	42.66	38.75
GSMUA_Achr10P...	Banana	plastid	36.93	38.42
GSMUA_Achr2P21540_001	Banana	plastid	37.39	37.3
GSMUA_Achr2P13470_001	Banana	cytosol	36.93	36.67

Protein Annotations

EnsemblPlants:GSMUA_Achr5P28960_001	EnsemblPlants:GSMUA_Achr5T28960_001	EnsemblPlantsGene:GSMUA_Achr5G28960_001	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF2
PFAM:PF04788	SEG:seg	UniParc:UPI000295F1C9	UniProt:M0T2M0	MapMan:27.4.5.3	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G28960_001]

Coordinates

chr5:+:28902158..28903800

Molecular Weight (calculated)

47509.5 Da

IEP (calculated)

5.713

GRAVY (calculated)

-0.337

Length

436 amino acids

Sequence
(BLAST)

001: MRKLWPNLDR EDGLDTVLEV PIPEEMFLSG DSSKSSKTLC TNVKAWVRPH VDRSPPSPIG RGAELQLMLG VIGAPLVPLP VQAYKSTLIR DMKEDPIEVS
101: MAKYIVQQYI AASGGEQALN AINSMYAMGK VRMTASGLPK GNGGGHGDAT DGKKAKKCGG AGEMGGFVLW QKKPDLWCLE LMVSGCKISA GSDGKVAWRQ
201: TPWHQSHASR GPPRPLRRSL QGLDPRCTAN LFANSVCLGE KTINGEDCFV LRLDAEAATL RARSSSSVEI IRHTVWGYFS QRTGLLVQLE DSHLLRIKSA
301: VQESVYWETT MESLIEDYRP IDGVNIAHAG RTSVSLFRFG ETSDGHTRTR MEETWTVEEV DFNIWGLSMD CFLPPADLKE EKEGGDVGGV AAAATKSARP
401: PFRVQQAVAR IGISQVAAVD VDESDSTSTE EEDGSQ

Best Arabidopsis Sequence Match ( AT5G05840.1 )
(BLAST)

001: MRKLCPNYNL EDGLETVLEV PMPEELFAAS KTKPGWNQMK SYWSKPTATA TGTATATNMT RLFGGRNAEI QLLLGVVGAP LIPLPVQPDH HNDYENPIHK
101: DIKDQPLEMS MAQYIVKQYI AAVGGDRALN AVESMYAMGK VRMTASEFCT GEGSLNSKMV KARSIKSGGG EVGGFVLWQK GIELWCLELV VSGCKISAGS
201: DAKVAWRQTP WHPSHASRGP PRPLRRFLQG LDPKSTANLF ARSVCMGEKK INDEDCFILK LDAEPSALKA RSSSNVEIIR HTVWGCFSQR TGLLIQLEDS
301: HLLRIKAQDD NSIFWETTME SLIQDYRTVD GILVAHAGKS SVSLFRFGEN SDNHSRTRME ETWEIEEMDF NIKGLSMDCF LPPSDLKKDD DEEEEIECGL
401: AANNEKLPMK IRSASLRISS SKVLAIVEEE DESEVTEET

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FFJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.