Factsheet for GSMUA_Achr9P25120_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P36120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79420.1	GSMUA_Achr6P36120_001	AT5G62880.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	72.7	74.92
VIT_19s0085g00900.t01	Wine grape	mitochondrion	61.13	53.09
KRH13789	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	58.46	51.3
KRH43665	Soybean	mitochondrion, peroxisome, plasma membrane, plastid	58.16	50.91
CDX79318	Canola	cytosol	12.46	48.84
AT1G79420.1	Thale cress	mitochondrion	56.08	45.32
CDX87382	Canola	mitochondrion	55.79	45.08
CDX88540	Canola	mitochondrion	55.79	45.08
Bra035117.1-P	Field mustard	mitochondrion	55.49	44.84
GSMUA_Achr3P29550_001	Banana	cytosol	43.32	41.01
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	37.09	40.72
GSMUA_Achr10P...	Banana	cytosol	45.1	39.07
GSMUA_Achr7P00620_001	Banana	mitochondrion	46.88	38.82
GSMUA_Achr10P...	Banana	plastid	45.7	36.75
GSMUA_Achr6P24020_001	Banana	cytosol	42.14	35.41
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	38.58	34.3
GSMUA_Achr4P32590_001	Banana	cytosol	45.99	34.29
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	46.59	34.28
GSMUA_Achr2P13470_001	Banana	cytosol	44.21	33.94
GSMUA_Achr2P21540_001	Banana	plastid	43.92	33.87
GSMUA_Achr6P16820_001	Banana	cytosol	44.21	33.79
GSMUA_Achr2P13560_001	Banana	cytosol	37.39	33.42
GSMUA_Achr6P33890_001	Banana	cytosol	37.98	33.42
GSMUA_Achr4P27870_001	Banana	cytosol	36.8	32.63
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	44.81	31.46
GSMUA_Achr5P28960_001	Banana	cytosol	39.47	30.5

Protein Annotations

EnsemblPlants:GSMUA_Achr9P25120_001	EnsemblPlants:GSMUA_Achr9T25120_001	EnsemblPlantsGene:GSMUA_Achr9G25120_001	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF8
PFAM:PF04788	UniParc:UPI0002948CEE	UniProt:M0U3B9	MapMan:27.4.5.3	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G25120_001]

Coordinates

chr9:-:29708789..29710114

Molecular Weight (calculated)

37067.6 Da

IEP (calculated)

9.655

GRAVY (calculated)

-0.309

Length

337 amino acids

Sequence
(BLAST)

001: MGPRIRRKNR VCLAQPLTPL VEGPDLDDAH GERAKKEKYW ESIGTWLRLH KDKGMSGSHF SIPFHGSGAS KWTDLKLILS VLGCPLAPLP LTTEPSHHFS
101: FKDSPIEASS ARYIIQQYLA ATGCLKHHEY MKSMYAAGRV KMVSRETDGP SGKIGARSGA GHGCFVLWQK SPGMWLVELV VAGCKVAAGS NGKVAWRNVP
201: WLGTDAARGP QRPLRRIIQG LDPKGTASMF TKARSGLLVY IEDSHLTRVQ APGSDTMYWE TTIGSTMGDY KEVDGVLVAH QGRSAASVFR FGDASAQSSR
301: IRMEEEWRIE DVVFNVAGLS ADCFIPPREM LTNFHGK

Best Arabidopsis Sequence Match ( AT1G79420.1 )
(BLAST)

001: MSNSKSYWRK QRWGTPPQAL TPLMEGPDPD MQDERTKKES SWEAIREWFK VHKGISGNMS SPSVQPLCNS YDVPAKGQDL RLLLGVLGCP LAPISVVVSD
101: LFPDDPLLGS FQIKNVPFET STAHYIIQQY LAATGCLKRA KAAKNMYATG IMKMSCCETE IAAGKSVKTL GGGGNGRSGD SGCFVLWQMQ PGMWSLELVL
201: GGTKLISGSD GKTVWRHTPW LGTHAAKGPQ RPLRRLIQGL DPKTTASLFA KAQCLGERRI GDDDCFVLKV SADRDSLLER NDAGAPAEVI RHALYGYFCQ
301: KSGLLVYLED SHLTRVMTIS PEDEAVYWET TIGTSIGDYR DVDGVAVAHC GRAVATVFRF GETSLQYSRT RMEEIWRIDD VVFDVPGLSL DSFIPPADIF
401: EDTNPNNNNI YSIVNSR

Arabidopsis Description

At1g79420/T8K14_16 [Source:UniProtKB/TrEMBL;Acc:Q940T0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.