Factsheet for GSMUA_Achr10P11500_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr2P01120_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P25250_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P21580_001
GSMUA_Achr6P23670_001
GSMUA_Achr6P36120_001
GSMUA_Achr8P00880_001
GSMUA_Achr8P05790_001
GSMUA_Achr8P08650_001
GSMUA_Achr9P17280_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27690.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr11P...	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr2P01120_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr3P09330_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr3P25040_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr5P07820_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr5P27590_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr6P15990_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr6P23670_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr8P05790_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr9P17280_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr11P...	AT3G07120.1	21798944
AT1G27690.1	GSMUA_Achr5P25250_001	AT3G07120.1	21798944
AT1G27690.1	GSMUA_Achr8P00880_001	AT3G07120.1	21798944
AT1G27690.1	GSMUA_Achr8P08650_001	AT3G07120.1	21798944
AT1G27690.1	GSMUA_AchrUn_...	AT3G07120.1	21798944
AT1G49840.1	GSMUA_Achr6P21580_001	AT1G21840.1	21798944
AT3G19540.1	GSMUA_Achr6P36120_001	AT5G62880.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	56.3	71.34
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	80.98	68.78
GSMUA_Achr6P16820_001	Banana	cytosol	77.12	68.03
GSMUA_Achr6P24020_001	Banana	cytosol	66.58	64.59
GSMUA_Achr10P...	Banana	plastid	69.41	64.44
GSMUA_Achr7P00620_001	Banana	mitochondrion	66.58	63.64
GSMUA_Achr2P21540_001	Banana	plastid	71.21	63.39
GSMUA_Achr4P32590_001	Banana	cytosol	73.26	63.05
GSMUA_Achr2P13470_001	Banana	cytosol	70.44	62.41
KRG91072	Soybean	plastid	71.98	60.48
KRH35700	Soybean	plastid	71.47	60.17
VIT_18s0001g09450.t01	Wine grape	plastid	72.49	60.13
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	73.78	59.79
VIT_03s0091g00410.t01	Wine grape	plastid	72.75	59.58
Solyc01g107350.2.1	Tomato	plastid	71.47	59.15
PGSC0003DMT400066530	Potato	plastid	71.47	59.15
PGSC0003DMT400055468	Potato	plastid	69.67	57.66
KRH05611	Soybean	plastid	70.44	57.56
CDX95439	Canola	mitochondrion	64.27	57.47
KRH15430	Soybean	plastid	69.67	57.29
CDY50147	Canola	mitochondrion	64.27	56.95
Solyc04g078190.2.1	Tomato	nucleus, plastid	42.42	56.31
CDY03939	Canola	cytosol	16.71	55.08
Bra038214.1-P	Field mustard	mitochondrion, plastid	64.27	54.47
CDY67693	Canola	mitochondrion	63.5	54.41
AT3G19540.1	Thale cress	plastid	67.35	54.02
CDY46168	Canola	mitochondrion	63.24	53.95
Bra022430.1-P	Field mustard	mitochondrion, plastid	64.78	53.73
CDY16530	Canola	plastid	61.18	52.65
CDY32838	Canola	plastid	60.93	52.09
AT1G49840.1	Thale cress	plastid	64.01	50.4
AT1G27690.1	Thale cress	plastid	55.78	50.12
Bra014219.1-P	Field mustard	plastid	61.95	49.39
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	39.33	46.79
GSMUA_Achr9P25120_001	Banana	mitochondrion	39.07	45.1
Bra010924.1-P	Field mustard	mitochondrion, plastid	56.56	41.2
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	40.1	41.16
CDX90103	Canola	mitochondrion, plastid	53.21	40.83
CDY67976	Canola	mitochondrion, plastid	53.21	40.83
GSMUA_Achr3P29550_001	Banana	cytosol	37.02	40.45
GSMUA_Achr6P33890_001	Banana	cytosol	39.59	40.21
GSMUA_Achr2P13560_001	Banana	cytosol	37.79	38.99
GSMUA_Achr5P28960_001	Banana	cytosol	42.93	38.3
GSMUA_Achr4P27870_001	Banana	cytosol	36.76	37.63

Protein Annotations

EnsemblPlants:GSMUA_Achr10P11500_001	EnsemblPlants:GSMUA_Achr10T11500_001	EnsemblPlantsGene:GSMUA_Achr10G11500_001	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF1
PFAM:PF04788	SEG:seg	UniParc:UPI00029524AC	UniProt:M0RHC6	MapMan:27.4.5.3	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G11500_001]

Coordinates

chr10:-:20929948..20931865

Molecular Weight (calculated)

42380.8 Da

IEP (calculated)

9.806

GRAVY (calculated)

-0.250

Length

389 amino acids

Sequence
(BLAST)

001: MEKEQGFFSA LKEEVVRGLS PARKAHGRHS SLTLAPDAAE GWGRWVRDQL SRAPSVTYLP SAAASASTSF RRSDLRLLLG VMGAPLAPVH VNSADLLPHL
101: TIKDAPIEVS SAQYILQQYT AASGGLKLQR SIHNAYAMGK LRMAASEFET ATKIVKNRGS SSHSPESGGF VLWQMAPGMW YVELAVGGSK VHAGSNGKVV
201: WRHTPWLGAH AAKGPVRPLR RALQGLDPLT TASMFANARC IGEKKRTGLL VHMEDSHLTR IQANAGGDAV YWETTINSFL SDYRPVEGIM VAHSGRSDVT
301: LFRFDETAMS HTKTRMEEEW KIEEVVFNVP GLSMDCFIPP ADISCGSVSE TCELPRGDRG KTGIAHQRKV AAVGKPQDAS DKIIWRVKV

Best Arabidopsis Sequence Match ( AT1G27690.1 )
(BLAST)

001: MDKKHGLFSK SNSRRPRSKS PVRSVSPIII RRRKGRYVTQ PDRHMSEMLA PVIEGPDPDA EDSGSSGDYS RFERRWYNWM KCQLPVAPPS VSSSSDFKRT
101: DLRLLLGVLG APLGPVHVSA LDLLPHLSIK NTPMETSSAQ YILQQYTAAS GGQKLHSSVQ NGYVMGRIRT MASEFETGSK GSKSKNNSSK AVESGGFVLW
201: HMNPDMWYME LVLGGSKVLA GCDGKLVWRH TPWLGPHAAK GPVRPLRRAL QGLDPRTTAY MFANARCIGE KKIDGEDCFI LKLCADPATL KARSEGASET
301: IRHTLFGYFS QKTGLLVHLE DSQLTRIQNN GGEAVYWETT INSYLEDYKP VEGIMIAHSG RSVATLLRFG DMSSGHNTKT TMQEAWVIDE ISFNVPGLSI
401: DCFIPPSELR FDSHVEDLSQ GPKIRTLHGH KNG

Arabidopsis Description

Lipase, putative (DUF620) [Source:UniProtKB/TrEMBL;Acc:Q8RWY0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.